c2551df733cfeda055868993fddebcc0 *DESCRIPTION
965a60bfd0ed4d7367bb42ce61fbd4f2 *NAMESPACE
8a5e5e950b6c48fc11d0e44f3a7006e9 *R/DEScan2.R
fd53b7f994b66d6af3b701ce8a485c8c *R/RcppExports.R
05808562ba73b08f396f78d30f48157e *R/countMatrixFunctions.R
a60b38c63a3110a074b861f8386fa6a8 *R/finalRegionFunctions.R
7b21cd60b0e4f34dbc9cf1c4a687a1e6 *R/peakCallFunctions.R
244e173e62fa717566c36ef60a4e1239 *R/utilities.R
6e60c2b95e48ed25253554f78aeea8e9 *build/vignette.rds
b1f2e024129484d5732292bd82236f6f *inst/NEWS
92f2b56fd16ad6aea80208de3f0c2729 *inst/doc/DEScan2.R
6c504cad4ab744de4f306a4d25aead2f *inst/doc/DEScan2.Rmd
f1946503305e26223f972bb3d62707ac *inst/doc/DEScan2.html
00b5bbd76de1cbfd6c735ab8d3f853fb *inst/extdata/bam/or_FC1.bam
9b42792f827c0364f4345c168efe27b0 *inst/extdata/bam/or_FC1.bam.bai
7bae660804d801aa1ace5d80c89a9a48 *inst/extdata/bam/or_FC4.bam
1af6e70338ffd9ca7defc8487b3cf27b *inst/extdata/bam/or_FC4.bam.bai
84cf7ddf664f87c1ca7caf9fc33e4073 *inst/extdata/bam/or_FC6.bam
17f6f5c7357f00a56efaf17d85f857ce *inst/extdata/bam/or_FC6.bam.bai
e8bf4b754d4eb884255ff45478aac0a8 *inst/extdata/bam/or_FC9.bam
2c737e8f81cde48329c1093c40039be9 *inst/extdata/bam/or_FC9.bam.bai
a870c98a7c7c1b308f6e0b1b9ed3484a *inst/extdata/bam/or_HC1.bam
ddb60cca9206fb1072368c6b069c650e *inst/extdata/bam/or_HC1.bam.bai
61335ebeba5ef06ce32d97059cee7ef6 *inst/extdata/bam/or_HC4.bam
c9c7e56c433a7620b434d5a4d26807eb *inst/extdata/bam/or_HC4.bam.bai
470b31b55e0f345afe2d98fa087314bb *inst/extdata/bam/or_HC6.bam
b92aac06c57d5bffa31f67ff4dfb7d2d *inst/extdata/bam/or_HC6.bam.bai
b9c224c3fad42d9efffff30b5c492858 *inst/extdata/bam/or_HC9.bam
90893c9c9ef82daaed37318da3f54819 *inst/extdata/bam/or_HC9.bam.bai
5e895ad9eb7e2dc33edba990b142e2d1 *inst/extdata/bed/FC1.bam.bed.zip
2310878d5743e7da726c831fcfd10b16 *inst/extdata/peaks/RData/peaksGRL_all_files.rds
40c2714be95717a97ad4b05a79907f0a *inst/extdata/peaks/bed/H_FC1.bed.zip
16df2c83266756fa6cb3b9a53a8105d1 *inst/extdata/peaks/bed/H_FC4.bed.zip
5be964a6bea3332c1939e7c246945c3e *inst/extdata/peaks/bed/H_FC6.bed.zip
672e18bb612e9d6e7ff3e91644243a2f *inst/extdata/peaks/bed/H_FC9.bed.zip
d10517c5b2771fe154d4000e4c89a0e7 *inst/extdata/peaks/bed/H_HC4.bed.zip
6eb216bd7ba16854822f2035eea28945 *inst/extdata/peaks/bed/H_HC6.bed.zip
aeb2f544b2902195a02dedc4ea255cce *inst/extdata/peaks/bed/H_HC9.bed.zip
aeda2b1f7a9f6bb726a3c0324d9b548e *inst/extdata/regions/regions.rds
60f59603e0abbc844b6f9881953f4dc9 *inst/extdata/tests/counts/finalRegionsSE.rds
f60d0293348c6f3f83e8f4e812c4ffbb *inst/extdata/tests/inputdata/FCGRL.rds
d092008ae0f2e15a24f8db2bba911516 *inst/extdata/tests/inputdata/bam/FC1.bam
66f547eb1b6d55a75347415d4ce21d3a *inst/extdata/tests/inputdata/bam/FC1.bam.bai
5e895ad9eb7e2dc33edba990b142e2d1 *inst/extdata/tests/inputdata/bed/FC1.bam.bed.zip
97e8137a30871e8f00c5a9a51c2b40d9 *inst/extdata/tests/peaks/FC1_GRL.rds
e1954c1157d135fb6516252b402e7505 *inst/extdata/tests/peaks/peaks_all_samples.rds
b0b1f3396b83cccb759275951beb6ec2 *inst/extdata/tests/z/z_matrix.rds
8d570d00e4f8a1f09c0dcb4cb36af151 *man/DEScan2.Rd
664febc5539be276a319a2f4d0c84891 *man/RleListToRleMatrix.Rd
a77f5792210b8f29a298e8ff004f14e9 *man/binToChrCoordMatRowNames.Rd
f6f9e2f4aafe6ce757158efe818bdea3 *man/binnedCovOnly.Rd
c13b28976ded839da9f806d0d86f3938 *man/binnedCoverage.Rd
009958814bc80f54046cf47589dd37a5 *man/c_get_disjoint_max_win.Rd
def93a42348be44b2354b1f7fbd322a8 *man/computeCoverageMovingWindowOnChr.Rd
5e38e7574de726ee70bf688b0f11767d *man/computeLambdaOnChr.Rd
49473c924d42248d3131053ced2bf97a *man/computeZ.Rd
cc5728b786b72ca3ef0a24f04d7cef5e *man/constructBedRanges.Rd
bb40062dc71cfc159c2ac718279f063b *man/countFinalRegions.Rd
8ffbc3cb7b56c878adb23562c91a61ca *man/createGranges.Rd
be221466c8de27ce8e8ea5ddd59a7682 *man/cutGRangesPerChromosome.Rd
213e5732edff578402e09b4eca7b19d1 *man/divideEachSampleByChromosomes.Rd
7fc299eaa0c17afb6b14ccd738266a16 *man/evenRunMean.Rd
5485dac62cf9705869805d57b0bde41c *man/evenRunSum.Rd
d4e8d084cdcd7831edbb5b5f21e7f9c9 *man/finalRegions.Rd
08938b90a3690927eae13e5772ca4ecb *man/findOverlapsOverSamples.Rd
fd35fac84221500b1ba06e0fe759a452 *man/findPeaks.Rd
29d9563997e0bb79bcac8845a294c967 *man/fromSamplesToChrsGRangesList.Rd
dbb2c997d698708433f52bad8e17ae8c *man/generateDFofSamplesPerChromosomes.Rd
78fe1a28e402d3cef1312bc6ce75cdd3 *man/get_disjoint_max_win.Rd
b4cbd627ba20df45b0f531dd7fec28a6 *man/giveUniqueNamesToPeaksOverSamples.Rd
122411b05bf7b196adabb86eed1bd6a0 *man/initMergedPeaksNames.Rd
ac4a34bedcef75f8258f159f59bb3090 *man/keepRelevantChrs.Rd
d2bc7c469634fbbf9504099b3e3e368f *man/rcpparma_get_disjoint_max_win.Rd
ceaea2ae9897f018258f70c14499cd6b *man/readBamAsBed.Rd
9420cf4d69f318bab9c7637363eaa011 *man/readBedFile.Rd
d64aa4cf9c42d24ba65fcdf255d09dfc *man/readFilesAsGRangesList.Rd
e81d6606b6015365278a349db0198899 *man/saveGRangesAsBed.Rd
c26883bad6993e47fe8bf18043cc3e9f *man/saveGRangesAsTsv.Rd
f10201cd9b32d8ff2a0ee3593c7f88c4 *man/setGRGenomeInfo.Rd
fdcb2e0c2502ed804ae55e75cf88055c *src/Makevars
e82c08f1a137f0b0840da5e6c843fcc2 *src/Makevars.win
be1e25199470579906e89310464bd429 *src/RcppExports.cpp
7fe098d808fa9f55eda71fd427c59fc7 *src/rcpparma_max_win.cpp
07c27fa621f873a056e91953ada60772 *tests/testthat.R
bfc0ea0e0502fbfb59bc041512c282d3 *tests/testthat/testInputs.R
107d0209262c8f401fee2ec921b73456 *tests/testthat/testPeaks.R
d0a4eac6d64edb2904a449904f3c2ed6 *tests/testthat/testRegions.R
6c504cad4ab744de4f306a4d25aead2f *vignettes/DEScan2.Rmd
