227623591060d8c2fcbfb7ed6b8365bc *DESCRIPTION
fde571c5584ddc0b0ca6d1e97ab0db8c *NAMESPACE
292f047e08da9ebb2e37ea316eb9b7af *NEWS.md
493197121ee81deef76f48c0e2226005 *R/AllGenerics.R
def1a8199b199092ed2ca72c0a9ab21c *R/CellStateMethods.R
f86fcb2a2f2dbf0a2be8d5f39e09f092 *R/CoreMethods.R
91c19208400973ac723678f0cd7fc7cf *R/IntegrationMethods.R
3623e887567afbdaf03a5aea844c2d98 *R/ReferenceMappingMethods.R
aeabd6671d8fb0aba386427664b62019 *R/Utils.R
c08cfe17ce1248d7b11f0c1dec23be13 *R/VizMethods.R
a205d5fb047ef3903b339ebb02b2365c *README.md
7ce5718756d1a96c035f4c015fe4a5c3 *build/vignette.rds
82d4b780fd7d93c012ecba7fd6ac1385 *inst/CITATION
7d3662cc598ecf785060d9cb90f18511 *inst/doc/CellState.R
642165a63f07029d0d25a1b88bece555 *inst/doc/CellState.Rmd
e3f54ab7076608932eaba3fb198f58d1 *inst/doc/CellState.html
594cd6db9c91949709515a228c1d8326 *inst/doc/Coralysis.R
a90a7e6b98097ddd6e7f1fe6b74d437d *inst/doc/Coralysis.Rmd
aebe7672963f76d80e6e0f8abf71ad8f *inst/doc/Coralysis.html
8e40984e529a55f8f862488c8612bed9 *inst/doc/Integration.R
c7d93c3f445f361c9a5528d8124ae386 *inst/doc/Integration.Rmd
c63640b34cbb229cccb8c11941d2a115 *inst/doc/Integration.html
a82e5ee20426c4138ac4197c2c57e88a *inst/doc/RefMap.R
a42eb81ac646fb89f45fbb375c161a84 *inst/doc/RefMap.Rmd
65217014d3b1b4e3f289771cf15710cb *inst/doc/RefMap.html
6651b2b5bd20685f007bfa41657e5d0b *man/AggregateClusterExpression.Rd
0dbe47ff73111b3b3e2a94550369910e *man/AggregateDataByBatch.Rd
d891fc44e54ce26c9f9d88b92a21d03e *man/BinCellClusterProbability.Rd
d4526bc6b10235d163f6bbd06ede4c4d *man/CellBinsFeatureCorrelation.Rd
1d860844dbc1bd60b2c8e2c7f30a7078 *man/CellClusterProbabilityDistribution.Rd
dadfd1c6b1423473e803157a8729fa77 *man/ClusterCells.Rd
2752d5ee819e0fea3ab136e540dcd3ed *man/DownOverSampleEvenlyBatches.Rd
58562f52dc441fe4071c930c79b8b9cb *man/DownOverSampling.Rd
ad20f60c6cb7d428d4a4fa832726ce96 *man/FindAllClusterMarkers.Rd
2076f3f07470323ed55c22fbeffec40e *man/FindBatchKNN.Rd
59050fa6f37edfcaed3235f9d4c91f26 *man/FindClusterBatchKNN.Rd
24b1172fba048e3b77bf9bcb59eb7c5e *man/FindClusterMarkers.Rd
47c9ee3f87fbf55a40f5b61a0fc9cc81 *man/GetCellClusterProbability.Rd
af33ee71195390bb1519951fae919467 *man/GetFeatureCoefficients.Rd
f1bd6591379481608402b2929f9269f7 *man/HeatmapFeatures.Rd
5e822d08f2581ac95a4f349a52c707c4 *man/LogisticRegression.Rd
470fd6544731344a68ba0c4180d23560 *man/MajorityVotingFeatures.Rd
981b2b4b464fe9bc740a841b17878911 *man/PCAElbowPlot.Rd
74a7a9c0e71425e56a9ccfe38b212b17 *man/PlotClusterTree.Rd
56c2fca77e4e01db75fee2a31db86f05 *man/PlotDimRed.Rd
7092f1d1b83fb46c42cc2e9e5c829c99 *man/PlotExpression.Rd
d30cf2b51b3433b81ca42466fac1a3ac *man/PrepareData.Rd
fa8f51ecafd0dbacd3c0e59b147c2058 *man/RandomlyDivisiveClustering.Rd
ba25b5e13ddbea6260873aa4a5829e71 *man/ReferenceMapping.Rd
e42d9fda2c961eb0870a230415f0bd4b *man/RunDivisiveICP.Rd
86136c98ed834360c9064a071a6c947d *man/RunPCA.Rd
ba20d4bc38fe8438fa0ff85e52183c5e *man/RunParallelDivisiveICP.Rd
2c4fbf06332e68bf93f5a1be8931ed79 *man/RunTSNE.Rd
e29ef33e8aa2b86d08eae58cd63d241b *man/RunUMAP.Rd
4b6483770c5857ae51667b7add9ca3e3 *man/SampleClusterBatchProbs.Rd
265d36bbc3e150eb0f8ca49816c8b516 *man/SampleClusterProbs.Rd
d1294dbe1a28b1230d78bce261956ecd *man/SamplePCACells.Rd
caded09abeb38810e488bffb1a1bb3e1 *man/Scale.Rd
0a19e1c1a0a1c97644d57b708389ecf2 *man/ScaleByBatch.Rd
eb344a4d0d50a86a5fd16afc38c57e34 *man/SummariseCellClusterProbability.Rd
c7870c0cb5e97de9e8f5bdbf974d576f *man/TabulateCellBinsByGroup.Rd
1c8232e9e8a370261838a4b4ffa9f67f *man/VlnPlot.Rd
f8447bf5a579463e072917867a6c6c1a *man/dot-randomColors.Rd
2ebc1f0ff90136ce0d01abdbf5541880 *man/figures/Coralysis_applications.png
ac41429d4e70b7c552fc3058377f94a4 *man/figures/Coralysis_flowchart.png
924f19bfec9f500e6669e49e205ede18 *man/figures/Coralysis_logo.png
298ec92df1a77eb36e6a8f79c7fa6d1b *man/figures/funding_logos.png
1753548df5f078a7fbc2dabb6646abc0 *tests/testthat.R
ac99981cf75d926f3d988ea3b511889c *tests/testthat/test-ReferenceMapping.R
7489ba36fe4e7e8b7a6e2d4c57edbdb2 *tests/testthat/test-RunParallelDivisiveICP.R
642165a63f07029d0d25a1b88bece555 *vignettes/CellState.Rmd
a90a7e6b98097ddd6e7f1fe6b74d437d *vignettes/Coralysis.Rmd
c7d93c3f445f361c9a5528d8124ae386 *vignettes/Integration.Rmd
a42eb81ac646fb89f45fbb375c161a84 *vignettes/RefMap.Rmd
