d9908f7d240b8e414bf2608c9f554201 *DESCRIPTION
6756bdd16eb44d48b25923854dabb8f6 *LICENSE
79f6d048925b1b4bf4c1660469656c03 *NAMESPACE
74c8b22260a08c4b8b183829ea6f094b *R/annotation_utils.R
11fd823dcd6d0c94ef5753e2bff458ad *R/beta_summary.R
32b3bdf02caa9700704aa7c409364b4c *R/clustirr.R
d5be766f43ffcc8aab3c226d51760845 *R/community.R
432d7c8b4bfae3bdb1df7948bc595bc4 *R/community_decoder.R
13aa42800dcb7b6cffc34c8abac0a403 *R/community_honeycomb.R
c5edf716c61d758da0d883e5cb2e4bc8 *R/community_purity.R
457739c069d3d4847caaff62716c2b72 *R/community_report.R
457739c069d3d4847caaff62716c2b72 *R/community_summary.R
a0223c53b948c2db9224ab034648fc00 *R/dco.R
177a7a6dd53f2ea7429ad0ff9a0bcb91 *R/general_utils.R
74dda14d8315839655bbce21b7992006 *R/graph.R
e5372177728237f638c74ee98d58c1bc *R/graph_utils.R
3a8805984d46174157e1fad611ee0d9a *R/input_check.R
b3cfb5205602bd5432a21f63f1ce7d65 *R/stanmodels.R
d800ef84ab0ac1234727692fbb64e7c0 *README.md
029fc925ab6aec2b13c9e763c7ed4e2e *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
3dba7dec2e30e166b8fd8b191ad81c2e *data/CDR3ab.RData
63ee7bf570015a13b03920859f7e4e42 *data/D1.RData
094947fc28a5cb4a09dfb55d5ea917aa *data/datalist
780bdd8fb27d72ed2db4c95b8b2824a8 *data/mcpas.RData
02920aa0aac515d45ffc27b1f1491098 *data/tcr3d.RData
0a56a42c15368d7016ff9d1a9d2f0f83 *data/vdjdb.RData
e148f14cbd6d434d4d5eb6fa15fb37eb *inst/NEWS
0c7df4999f04ee8bd95eaeed52f32889 *inst/doc/User_manual.R
465c63fcdb5c5275fc2d6ea8bfcb5d89 *inst/doc/User_manual.Rmd
257d4b5a3708c97d9ded2d740d12370b *inst/doc/User_manual.html
1f19029c47d2bb30fa0efc405cb4abd8 *inst/extdata/logo.png
b903db168b88f714514f4ae10756e1b8 *inst/extdata/logo.svg
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
81a12bda264c72db2f86af3168241246 *inst/script/get_BLOSUM62.R
84d5cc1d730f32a454a03d1dceab0380 *inst/script/get_data.R
12693112de6e32774e404464e3ffdce1 *inst/script/get_mcpastcr.R
3dadbce4beeb328d1ac15edd9beca83d *inst/script/get_tcr3d.R
f57ee7f854bbb095dd2c6de11ef640a8 *inst/script/get_vdjdb.R
300cee748b13241ace3ffbe7e991cf32 *inst/stan/dm.stan
6edece9a1ea2844b04a63fd7b1d82f6f *inst/stan/dmh.stan
c0ffc42be85f4385721be82e61944476 *inst/stan/include/license.stan
dfd24ad3ce1442c12eb66f11dca575cf *man/BLOSUM62.Rd
c1e792a598158e820924eac3e3c46b5a *man/CDR3ab.Rd
9f1c07e3c085ee3fde8b0a6235f6201c *man/clust_irr-class.Rd
71477e7bef42471d0766d6d3844e79a8 *man/clustirr.Rd
31d9bb28d4a2e0765464031751a48056 *man/dco.Rd
899a575a785dc37fc4fe99e1fa0e6c60 *man/decode_all_communities.Rd
d47342d94f4ee35e9edcdf157d0c1ac4 *man/decode_community.Rd
9d577c58e533a2defed563837e4532dd *man/detect_communities.Rd
34fc0fd332eefab4f9748528329d0853 *man/get_ag_gene_hits.Rd
f2339f4650c184848d9fde4cba72a065 *man/get_ag_species_hits.Rd
4cc06eccd4057e2a64e0d08e34acfad3 *man/get_beta_violin.Rd
be1ae8e1a137280b43e39301f9c6b317 *man/get_community_purity.Rd
5696cab9f70e236aac10955639e6b5fa *man/get_honeycombs.Rd
981fdfc94a4e928788e997902561be15 *man/mcpas.Rd
21f01709301351f7d74d6148673a5af2 *man/plot_graph.Rd
a88d60bd86c5aa58398d9673430d7f82 *man/tcr3d.Rd
dc61a7e1ea276382cae40a7724566123 *man/vdjdb.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
4cc2e81e42a31bc19686f08bf823af33 *src/RcppExports.cpp
7ad30b2dcb1bcee88a926aaef0578920 *src/stanExports_dm.cc
f06fd529e8a58aae68cf5e0b0ee24275 *src/stanExports_dm.h
85d069fe22fb075b6c2c451bb370b641 *src/stanExports_dmh.cc
bf1aacd503a9914ea0e72feacb511941 *src/stanExports_dmh.h
d9231670a321358c87c552198b4d3d32 *tests/testthat.R
44cf5caf687f970b556426b766c85baa *tests/testthat/test-s.R
465c63fcdb5c5275fc2d6ea8bfcb5d89 *vignettes/User_manual.Rmd
