3df1df91c6cf90ab7d6e43b4ae35c9a6 *DESCRIPTION
c2154d148ff1a2b09248041fb90ff4f7 *NAMESPACE
2c575924f2d9c6261cc9b5369ce4ba21 *NEWS
a8f2fa2b2705e1c3eb3f7283c9c5d219 *R/CleanUpRNAseq-package.R
040cd00631429f824b452a37ad3d72ed *R/R6_class.R
99c90018757f81e9a8d52235fc59d8d7 *R/check_gDNA.R
320dcab9ee4b8b1eca8f526a911a1ed4 *R/correction_methods.R
0f8b4a71d855ca19713011957e5e83de *R/data.R
cbdc5f492606a37c89aa415dbf446a45 *R/misc.R
ab50766adf462e1f03d267d68fbe0aed *README.md
0035260bdcd3edfabfb37ce9cbc07f81 *build/vignette.rds
d973f7b44bc19b325566ab17c3f61f5c *data/feature_counts_list.rda
e98629a23fdebe71db31b53ea75b4c6a *data/gene_GC.rda
9ea690cd5cf3489a273139accc8c47d9 *data/intergenic_GC.rda
4f2865b83ad83a8f96f2338357def967 *data/salmon_quant.rda
ef365b13baa07ce0f4dbebdc9ae43757 *inst/CITATION
5005cfde17402e2a0cb008ee31ca7432 *inst/doc/CleanUpRNAseq.R
0d4331813d6b384da92992a74a0e099a *inst/doc/CleanUpRNAseq.Rmd
5a4a54d5dac6f878299c0640e772270e *inst/doc/CleanUpRNAseq.html
c84b3702c84916639529028b96413edc *inst/extdata/K084CD7PCD1N.quant.sf
ba2a1e316c4c87d118be8b82e871b5f8 *inst/extdata/K084CD7PCD1N.srt.bam
cb72a52b394b5e773ffdd92a4ab6701f *inst/extdata/K084CD7PCD1P.quant.sf
c5ddeb42ab7078cd7478c9f816ef0942 *inst/extdata/K084CD7PCD1P.srt.bam
6cb21e03043649c1feee70611707ff3a *inst/extdata/example.colData.txt
f3d0052368eeb65e8d81e0d99bc33d99 *inst/extdata/example.gtf.gz
3d687f284fff7dbeb619b3ecc3fa520d *inst/script/data_description.txt
4e0b92c960cdd9e8e80c8e4101fdfc4d *inst/script/subset.featurecounts_list.salmon_quant.R
b02b9ebc5ad6d3ad8dd9918fd67c0778 *man/CleanUpRNAseq-package.Rd
d7c7e6ba0984cd0ef7172834693e371a *man/SummarizedCounts.Rd
0a0da5b38eaaeb6997e7b08fe060d497 *man/calc_gene_gc.Rd
29c6029ba745ff1541f267badbf556c6 *man/calc_region_gc.Rd
feaf044c5da3fdc5481fb2aada91cce0 *man/correct_GC.Rd
fc22210d80048ba547094d561f0e471f *man/correct_IR.Rd
1ff19ee5b1b028aff8aacf1b0bc44572 *man/correct_global.Rd
068802f15509cd3e0477fef2afc9ce46 *man/correct_stranded.Rd
9a78fc2b3ffd030822b37343d3b5ad55 *man/create_summarizedcounts.Rd
f4a19eb46141f3f9144b6bb60717a645 *man/feature_counts_list.Rd
5b998789108cb303e75369bc87228017 *man/gene_GC.Rd
08a80bf10e659b48b908fb4797d84967 *man/get_region_stat.Rd
8decf4c2b800a80c2bb35523ac9fc789 *man/get_saf.Rd
7dd054dfb1cd672ca05e47279b47972f *man/intergenic_GC.Rd
6f290b18e4966e75fe02a857ec13d724 *man/plot_assignment_stat.Rd
34a980cdaba435b4c59be69a5599398b *man/plot_expr_distr.Rd
4ded435e6059e5a6f2956fb4b06ad257 *man/plot_gene_content.Rd
11b99c39de77d1058dcdaeda76394516 *man/plot_pca_heatmap.Rd
7c195bdb5ad1b8e38bd56a17aa042e93 *man/plot_read_distr.Rd
0ebf641aa446bf48c4fe34ca45c36fe0 *man/plot_sample_corr.Rd
dad6a680fe3bcf392280bc86c2fcb9a9 *man/salmon_quant.Rd
b72d2953a8c6177f44079d98be6dde5e *man/salmon_tximport.Rd
078ea7b4db4a77dc94acafd10e065fac *man/style_BSgenome.Rd
9c79a44c764babc6efc60ab716644c64 *man/summarize_reads.Rd
a8569a25f3e2dbd797de86867e0ec480 *tests/testthat.R
af24f6983d4b7cbadd2bfee524f3770c *tests/testthat/test-R6_class.R
c2cc0a449941ec5d957243f47ff08880 *tests/testthat/test-misc.R
0d4331813d6b384da92992a74a0e099a *vignettes/CleanUpRNAseq.Rmd
1f613e326a5d4aa5188c03117c9e63b5 *vignettes/bibliography.bib
