eb0811574d79d17e7edfc7160ee43b4f *DESCRIPTION
287b27ae1ffdd3129c2c051352a2b8b3 *LICENSE
c18703e4aa3e3f03c172f81116233bff *NAMESPACE
98e1b713358ed4db26d10576d0c25293 *R/alignment.R
6913ddb6728f4ef1f653159083584ecc *R/app.R
5f828e91a52c913d89b98951a480b09e *R/classes.R
f6911c6962d252291b2fbc9fd8b183c8 *R/coverage.R
da6295449040c3f1f173ff5239fc779a *R/simulation.R
99c627f48601980bf8d47dbd581d62f6 *R/utils.R
71523582a6caa70d70b126d183f28226 *README.md
b75e4b8cbc7a3a3c6b908613b4159a8e *build/vignette.rds
0b75bbeada1ca53ada1e430f58e39fc5 *inst/CITATION
9227ed4c931a0be166782b74921f946f *inst/NEWS
9abc83b0c6cbb778d59c4cf2b6bea92a *inst/doc/CircSeqAlignTk.R
66da1f44cefeb13e48115b274997764a *inst/doc/CircSeqAlignTk.Rmd
4c45ed36e5c4c43f0719b42732a4e976 *inst/doc/CircSeqAlignTk.html
a531099143ac6f7ef54721d04a9e2e33 *inst/extdata/FR851463.fa
4cfb97ea24fd2118363fd03b6edf9425 *inst/extdata/srna.fq.gz
4a2aa8e06ce70a0ea21ff67304e183f2 *inst/script/FR851463.fa.txt
e0951f14308f15c08b4a5aca59b027c7 *inst/script/srna.fq.gz.txt
3cabc90628e6742f081f41a5f6f7fba3 *man/CircSeqAlignTk-package.Rd
ef62345f0c866914efbdd8973abbe913 *man/CircSeqAlignTkAlign-class.Rd
3a6fb5e43e1d656b129b328da56a885b *man/CircSeqAlignTkCoverage-class.Rd
68859b9bfe6fd3c56dcfb85e8e92d0de *man/CircSeqAlignTkRefIndex-class.Rd
cc9fa094de72e3a4362e3b166d7b662a *man/CircSeqAlignTkSim-class.Rd
ebc41e0177d69faa8a069f6acce1fa82 *man/align_reads.Rd
e040ba5e51e7ec70ee1919648291096c *man/build_app.Rd
1cf58880ece4f04464c796abc31dbf0e *man/build_index.Rd
9a9627bff80df7caf35319153cfb9f80 *man/calc_coverage.Rd
7312adbf2d590db05bc79877a14cea22 *man/filter_reads.Rd
a038097be7416d6d7b92228edd3c52a6 *man/generate_reads.Rd
9e1bbb09f65bd9678a0c54512b047885 *man/merge.CircSeqAlignTkSim.Rd
bf338471722cc4b9d0469311dda83acb *man/plot_coverage.Rd
e0de4ecc6656b33f5ac98a5cab4cef06 *tests/testthat.R
7c8d9e378ba8ef385ebc03e545e8bdc6 *tests/testthat/test_workflow.R
66da1f44cefeb13e48115b274997764a *vignettes/CircSeqAlignTk.Rmd
658b284a696b9b47f0a4ea8249bed5d0 *vignettes/overview.png
eb9d9134a5e1f0eb2271a1dfc12fae5b *vignettes/references.bib
