# Generated by roxygen2: do not edit by hand

S3method("*",BarcodeObj)
S3method("+",BarcodeObj)
S3method("-",BarcodeObj)
S3method("[",BarcodeObj)
export("bc_meta<-")
export("bc_names<-")
export(bc_2df)
export(bc_2dt)
export(bc_2matrix)
export(bc_auto_cutoff)
export(bc_barcodes)
export(bc_create_BarcodeObj)
export(bc_cure_cluster)
export(bc_cure_depth)
export(bc_cure_umi)
export(bc_extract)
export(bc_extract_sc_bam)
export(bc_extract_sc_fastq)
export(bc_extract_sc_sam)
export(bc_merge)
export(bc_meta)
export(bc_names)
export(bc_plot_count)
export(bc_plot_mutual)
export(bc_plot_pair)
export(bc_plot_seqQc)
export(bc_plot_single)
export(bc_seq_filter)
export(bc_seq_qc)
export(bc_splitVDJ)
export(bc_subset)
export(bc_summary_barcode)
export(bc_summary_seqQc)
exportClasses(BarcodeObj)
exportClasses(BarcodeQc)
exportClasses(BarcodeQcSet)
exportMethods("[")
exportMethods("bc_meta<-")
exportMethods("bc_names<-")
exportMethods(bc_2df)
exportMethods(bc_2dt)
exportMethods(bc_2matrix)
exportMethods(bc_auto_cutoff)
exportMethods(bc_barcodes)
exportMethods(bc_cleanBc)
exportMethods(bc_create_BarcodeObj)
exportMethods(bc_cure_cluster)
exportMethods(bc_cure_depth)
exportMethods(bc_cure_umi)
exportMethods(bc_extract)
exportMethods(bc_merge)
exportMethods(bc_messyBc)
exportMethods(bc_meta)
exportMethods(bc_names)
exportMethods(bc_plot_count)
exportMethods(bc_plot_mutual)
exportMethods(bc_plot_pair)
exportMethods(bc_plot_seqQc)
exportMethods(bc_plot_single)
exportMethods(bc_seq_filter)
exportMethods(bc_seq_qc)
exportMethods(bc_subset)
exportMethods(bc_summary_barcode)
exportMethods(bc_summary_seqQc)
exportMethods(format)
exportMethods(show)
import(Rcpp)
import(ShortRead)
import(ggplot2)
import(methods)
import(stats)
importFrom(Biostrings,readDNAStringSet)
importFrom(Ckmeans.1d.dp,Ckmeans.1d.dp)
importFrom(data.table,":=")
importFrom(data.table,.N)
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
importFrom(egg,ggarrange)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,extract)
importFrom(magrittr,extract2)
importFrom(plyr,.)
importFrom(plyr,count)
importFrom(stringr,str_c)
importFrom(stringr,str_glue)
importFrom(stringr,str_match)
importFrom(stringr,str_split_fixed)
importFrom(utils,aregexec)
importFrom(utils,combn)
useDynLib(CellBarcode)
