b5145938d1b774ed29f0ecdedb13883a *DESCRIPTION
395722acb8fcd996f10a407dcf5b3c18 *NAMESPACE
c14878327686a56bb9c73fcc8908e71a *R/AllClasses.R
4c03495d8015fb75995cbb1d3fd5a92b *R/AllGenerics.R
44dc0c390ec930095f7abcf50ae675d0 *R/ChrBandTree.R
02c0a644bf80b45ec29192c2565787a6 *R/ChrMapHyperGResult-accessors.R
97a63af57102e1f1b1ef658407a765a6 *R/ChrMapLinearMResult-accessors.R
58881ca3af2e375562e8d6b8a02f8e02 *R/DatPkg-accessors.R
01c28d9b88cb55acbc8488e564df5ca1 *R/HyperGParams-accessors.R
b7dd20d77d2538b421719896e4c7234e *R/HyperGResult-accessors.R
de4e7d13e958b89bec195cb59b68adf2 *R/LinearMParams-accessors.R
796da9ea706cd47dd4ef7d8b70e8b629 *R/LinearMResult-accessors.R
bdcc9c47337fa9df1ee09d467e44be8d *R/MAPcode.R
4c15d94c01f3fba4e80e57bcbc3eb354 *R/catcode.R
0c078079903695752c5fde5e1306971c *R/cateGOryMatrix.R
9c10b3f5fb65a0514292880a2f15beef *R/categoryName-methods.R
8fe1ce91cd181aed666491918bb29540 *R/categoryToEntrezBuilder-methods.R
e9fe2d474bba723b50d16340612b0966 *R/cb_test.R
7660056a940a6bcd5bb03d274007da14 *R/gseaperm.R
9742d443b87fe8b3a68d36c26e55b125 *R/hyperGTest-methods.R
69aa47c5a42d2496006183d4b23e5065 *R/hyperg-methods.R
ddb6c3c42156afa013757e15da9ad23c *R/initialize-methods.R
fabefd0900945d46d7f829653d14a1d7 *R/linearMTest-methods.R
9b69f572933dc50403429ca31bf6bf6e *R/mouse.R
c9af5490de66b4e8d67a6067a40d32b2 *R/show-methods.R
c8245c47eace24cabb81eeb1cb80a39a *R/summary-methods.R
d1b5aec6cbb9dc762ab2b7ca7c4be7b8 *R/tree_visitor.R
cbd559a3c678ca22f4e2f191b2885bd5 *R/universeBuilder-methods.R
5d7a42fe4fc9794dbd3d605d1f9d1ac4 *R/utils.R
279f5eea07788d8e523bff2f9539a15b *TODO
1a7a69cf3f0f22786a25de8261f0038a *build/vignette.rds
bc246ff740e16613097cb440e4e1035b *inst/NEWS
72b0397747ed4f9b9ac736b430520def *inst/UnitTests/HyperGParams_db_test.R
121d8bd81a481153280f3004bea5bf3c *inst/UnitTests/HyperGParams_test.R
d8779aa981e293c78db0cd908bb53729 *inst/UnitTests/Makefile_tests
9b411d2ab17d921c2d92f86e1735043d *inst/UnitTests/ghgans10.rda
43090238f75e3c6795a436edc1c59048 *inst/UnitTests/hyperGTest_KEGG_test.R
0f2441b65c7b98b8e334208ed12355af *inst/UnitTests/hyperGTest_PFAM_test.R
97d7a23f367b029674c3b1a5655213c7 *inst/UnitTests/hyperGTest_test.R
ca3751da0005d327de758b6b692f8171 *inst/UnitTests/runall.sh
2d944efc2394501568388a0c6a867de6 *inst/UnitTests/runalltests.R
cee68a801821216d0642b46f0548a874 *inst/UnitTests/runfile.sh
51fd012ce8d093cd49e51fe0a82896f7 *inst/UnitTests/test.sqlite
52e9cb729f97f48fed5f5ec638941b23 *inst/doc/Category.R
1fe45807deb93aacc29af3689909c0c1 *inst/doc/Category.Rnw
2e94c0f4f243263791532f45df4f774a *inst/doc/Category.pdf
1f28c9584c0c870ddc9feff345ff9760 *inst/doc/ChromBand.R
52c86eb652d18871c6d506e1e9656014 *inst/doc/ChromBand.Rnw
272e5c22b06c6e52aa5a1cca703237c6 *inst/doc/ChromBand.pdf
16f4c02e8477ed839750a782e4c30d39 *inst/scripts/CLLex.R
3a212d6aae0e0975518d3563fbe20f1f *man/Category-defunct.Rd
6618de71a802119248cf9406cde78985 *man/ChrBandTree-class.Rd
95324a9997d49ee78cd57b31fb707605 *man/ChrMapHyperGParams-class.Rd
24fd96d2f8f6d756db4aefd44f5de2d3 *man/ChrMapHyperGResult-class.Rd
da14520cdead214e04f370d27e33530d *man/ChrMapLinearMParams-class.Rd
4fb0d2f33c9777779d8fe503fe79b856 *man/ChrMapLinearMResult-class.Rd
57dc42979c73c3e97aa04f7b71642999 *man/DatPkg-class.Rd
65174395c925b5c6475f48685f7cc14c *man/GOHyperGParams-class.Rd
5abc782c4500fac53539b447d5711592 *man/GSEAGOHyperGParams.Rd
d780f43cfa949a12fb79b3d17b5de250 *man/HyperGParams-class.Rd
b9ac7a656b8bba6c5ded44854e85d632 *man/HyperGResult-accessors.Rd
cd8de6ce376152357f6efd47ece33d79 *man/HyperGResult-class.Rd
6b81df1df808cff07f3c6860ed63af74 *man/HyperGResultBase-class.Rd
094c20cb1bfcfd7b524b9785b944f5f2 *man/KEGGHyperGParams-class.Rd
b5250190dc7057272d6febc05003de7f *man/LinearMParams-class.Rd
343e50ed62ffc94cf7ee1c134311c8df *man/LinearMResult-class.Rd
ed7e23793b0d2ea891bdf84e61b30ccc *man/LinearMResultBase-class.Rd
85588bdfddef968f19635587c9dd970e *man/MAPAmat.Rd
8febd6cd0f689cee3bb909e67d63e0cc *man/NewChrBandTree.Rd
09f810a2d296b3e9441b2b6a22b61369 *man/OBOHyperGParams-class.Rd
0955e1abae1d8ba89595dd5ebaa75772 *man/applyByCategory.Rd
3ce06365c9dbee3d772662dc4a564d0b *man/cateGOryMatrix.Rd
3a34007592abf10585bbe830c7a4c5f8 *man/categoryToEntrezBuilder.Rd
8e73249e229579e606884cca130e0813 *man/cb_contingency.Rd
243dbe56b810a73f772094d5395a4585 *man/cb_parse_band_Hs.Rd
73e83906da45c08d0a0b009a38db8d2b *man/cb_parse_band_Mm.Rd
9b51998a8c190d6b11570d477a968f04 *man/cb_test.Rd
c0e559b05d39f02c6583b15bebf87de1 *man/effectSize.Rd
831fe1ce056259312b36399e731017e8 *man/exampleLevels.Rd
9bd2c5b572d18555a024b9091394a54d *man/findAMstats.Rd
8c578158eee59697b18f3432f0e77b0f *man/getPathNames.Rd
6f5ca5a651d1a2e3e5a28f5e6e844308 *man/gseattperm.Rd
490766879b850440b3e5c85a9f052732 *man/hyperGTest.Rd
5fc194aae7960acdd4845d50abf1e0fe *man/hyperg.Rd
89bc2adfe81069466eab39c9b90b8836 *man/linearMTest.Rd
077842278c7f70aead60cee3e5607c03 *man/local_test_factory.Rd
5fcdc003f08e311eac748ef394753353 *man/makeChrBandGraph.Rd
768267670b7939158af26be29411affb *man/makeEBcontr.Rd
684b2a52d78288925551249098f56e76 *man/makeValidParams.Rd
037c10da2bbd0c8120ffb48906967110 *man/probes2MAP.Rd
f3992e9e59e93b6634f934aec61b488c *man/probes2Path.Rd
5548254014a662101055cd2f308c4cb7 *man/tree_visitor.Rd
401f64782f23c95d8d321b3d996e21bd *man/ttperm.Rd
f33a5336b283d5a002c3d3e0fd6df9ce *man/universeBuilder.Rd
17b3e485d5a9509cea7ce56418743462 *tests/runTests.R
1fe45807deb93aacc29af3689909c0c1 *vignettes/Category.Rnw
52c86eb652d18871c6d506e1e9656014 *vignettes/ChromBand.Rnw
d908ef320e4e044115ee19bcc71b9b4e *vignettes/cat.bib
