69e4083a3512759cfc33e2b37857573a *DESCRIPTION
e49f4652534af377a713df3d9dec60cb *LICENSE
9d1100759e201f3f6dd260cdab7b7fc8 *NAMESPACE
8f0297a278c9ea7136dc3df58d1fc7dd *NEWS.md
4a9cdeef071b4a9c3db5d10cfc338349 *R/BRCA_GISTIC_MUT_SIG.R
3ae0e44bebdec2b2f94f476af0f13864 *R/CCLE_MUT_SCNA.R
b54c7dbf95686c1d59e8428fce3f348b *R/CTNBB1_reporter.R
656710fb0da5bed70182f3293f4b42e0 *R/TAZYAP_BRCA_ACTIVITY.R
9c11d5026b6b9003b4402f7984f2ee5d *R/cadra.R
656ad028a185ddb6445e6534ab5c3269 *R/cadra_functions.R
bb0154aa34c0278d7d8fab8a176cb3d1 *R/calc_rowscore.R
3acf37d2f87ded32505deb81a62f1daf *R/candidate_search.R
ac8a14e5e113ed20face8c54349f43ff *R/corr_rowscore.R
3ab3d599a4e213defb846c2aa79d8d7c *R/custom_rowscore.R
b41c56d14dc25b1cec35f5670cc8a99e *R/knnmi_rowscore.R
dae105e68ed22f41ceb830c49c7b70d5 *R/ks_rowscore.R
5b80a69bfa3988b6bff9a1fbea842c97 *R/meta_plot.R
ecac714e001de0a947e620de07f71d18 *R/perm_res.R
ed0d36d51a130c6d1401817b1cf8f6bc *R/permutation_plot.R
cce1f7c28721f4b5b2577fe22390dac5 *R/revealer_rowscore.R
12ab9e3a14bee97f6742658583ff1b18 *R/sim_FS.R
7d69be1d8b1a5f812a3f1f6c79d6580f *R/sim_scores.R
13bc33b42ac33389adca2e614dd8f0db *R/topn_best.R
57b84e9b5853c64dd2a784adfbffb8d0 *R/topn_list.R
67a43e315cd0e9e71e3367ba0eb82d18 *R/topn_plot.R
f28df22723ecbff5a4d94e8cbf319b70 *R/wilcox_rowscore.R
ded97394113049b426b2b0f55fe2ed97 *README.md
2e149e8850dc880efaf44c97390ac387 *build/vignette.rds
740f116160f82a451a5995ecdeef855f *data/BRCA_GISTIC_MUT_SIG.rda
16f28cf215808fc87625349ba1b3c373 *data/CCLE_MUT_SCNA.rda
7c5e66fb82ba7692bcb76c6315059e7c *data/CTNBB1_reporter.rda
5f98c30ede51b521a1ad40eb4c873a5e *data/TAZYAP_BRCA_ACTIVITY.rda
9cdf4a54e608f91a71b7b4ad05b9eccf *data/perm_res.rda
c85c0c3a8c4b9a8893c3193b988c595d *data/sim_FS.rda
1ca91f1ab88b212d6ff1531cdaa1c0cb *data/sim_Scores.rda
90739aa71172a9e4c1a9c1294ebf3bc8 *data/topn_list.rda
a8f189d023bbb14f0d346c314c0263ae *inst/doc/docker.Rmd
e9de6496b839f6136db7e78828ffd9ea *inst/doc/docker.html
9440b092c390540403e5dfc75b2411ca *inst/doc/permutation_based_testing.R
f4ecb41c30f195eee77c99f6f0563868 *inst/doc/permutation_based_testing.Rmd
ab145c22a32e07149905017a18560e2e *inst/doc/permutation_based_testing.html
2550c2d6505e5b0a8275161cf5aa5c43 *inst/doc/scoring_functions.R
6331d987f8a05907de467897fde9c57b *inst/doc/scoring_functions.Rmd
92d0077f7b07252e978b1d35911d014c *inst/doc/scoring_functions.html
5b002621344387af4c999a1849d7af94 *man/BRCA_GISTIC_MUT_SIG.Rd
b96b476ee3e836264033bbc9736094c8 *man/CCLE_MUT_SCNA.Rd
fa3193b536bbf3967d8c9d459fa5a162 *man/CTNBB1_reporter.Rd
12dc97cd697c2ac11dec1e97bd4686d7 *man/CaDrA.Rd
39e4e08e216a79d4cd85dc02ccc4a9a3 *man/TAZYAP_BRCA_ACTIVITY.Rd
b8384ca6da836e56e371db6c457fa993 *man/calc_rowscore.Rd
e2858e1461280799a898b0d5508afb00 *man/candidate_search.Rd
b773f158f6f92b0faecd6354568efa6d *man/figures/visualize.best-1.png
c050774238eb1b2f7cd44a27d8179433 *man/generate_permutations.Rd
51c5557b8e6aeeb40444e7bcb525199f *man/meta_plot.Rd
e2ace0d4b910e671be723c5992937cf9 *man/perm_res.Rd
1cd7c098019c56655721b016c74f94df *man/permutation_plot.Rd
8aecb09239f0633209022de4bd54e9c9 *man/prefilter_data.Rd
aee6ccc80162e0cb0845fe7b6f29c6ce *man/sim_FS.Rd
1c09fa702e0324a8e25ccd1f59151d16 *man/sim_Scores.Rd
59f87eca8a4b46e68c1688d8d8c5a528 *man/topn_best.Rd
b99841fe3d637f8680d049233ff997c6 *man/topn_list.Rd
f5ac6ae3b6f3a34724f98e8d38e0e788 *man/topn_plot.Rd
da66614d7213139a2d6f2dd8dc3c7d46 *src/registerDynamicSymbol.c
2ee7a94d369ac3c0af74127010e051e6 *src/score_fun.c
ef0b3594ed9439dc6c5d08ae1be56b0b *tests/data/create_toy.R
ffefc99fc99f7084d4a8a3de5f0aeb18 *tests/data/create_toy.old.R
e9de6ccec0fccf2dd9da560493a3e65f *tests/data/create_toy2.R
2d223bdd702cbe26edcd7ff6f93c9932 *tests/data/toy_dataset.csv
035a4a1ad93e44fa294b4fc75fb3bd45 *tests/data/toy_dataset.rds
3787413efc03c0dd0bbddec40cb6d0f9 *tests/data/toy_dataset2.csv
ca14c8c20c460f9cf6eb69991fef04ef *tests/data/toy_dataset2.rds
23b1cbe5c5b7e02cd351eae889a514ee *tests/testthat.R
a4ac33288c907fb067f1577c7a4c6880 *tests/testthat/test-cadra.R
b43374fec913cf8e26d03fb5292e9ddf *tests/testthat/test-candidate_search.R
acb257fa7d0fb4368f8173004091bcb1 *tests/testthat/test-check_top_N.R
c6089859d49d33ccb2a10b900fd62aad *tests/testthat/test-custom_rowscore.R
ab61a4d79938487a78b0db553dafe16c *tests/testthat/test-generate_permutations.R
3a066457dff1668e9b5d766f1bef5704 *tests/testthat/test-ks_plot.R
73600b5d7fda4a9b8750ab70f43bf1cb *tests/testthat/test-ks_rowscore.R
a52952d02d86b5bfdac0200e10dfe6e6 *tests/testthat/test-meta_plot.R
430a566e410df0beb30bddd6251e8fed *tests/testthat/test-permutation_plot.R
da07949f654ecfb066d40217c2e0a984 *tests/testthat/test-prefilter_data.R
2926fa0aa9b372d73d6817de9dd576ba *tests/testthat/test-revealer_rowscore.R
bb54054b9ca2c5c39a689c915c88458d *tests/testthat/test-topn_best.R
235869bcdfba957ef79efbbb93d8842f *tests/testthat/test-topn_plot.R
5a10422984a43b8025140ee89e783c31 *tests/testthat/test-wilcox_rowscore.R
a8f189d023bbb14f0d346c314c0263ae *vignettes/docker.Rmd
f4ecb41c30f195eee77c99f6f0563868 *vignettes/permutation_based_testing.Rmd
6331d987f8a05907de467897fde9c57b *vignettes/scoring_functions.Rmd
