d34c292f910f17037cdd70997fd5f377 *DESCRIPTION
f32c6088819b97dd6ccbc86b455f53d6 *NAMESPACE
39f44e6091f7c6bff1655ae968bcfbb4 *R/FC.R
f05685ed810b4632bf04a71fa4777def *R/ansTransform.R
77ffeec9eb40b374aee9116bcd9cd4f4 *R/calculatePval.R
1908fb7c0bbc01bb74ed5a214cc18355 *R/dbAnalyze.R
e93fef389a314df35652b40d1f416005 *R/getBgSubVal.R
0b72f9d546a2e2c8d02cdd8466bb36db *R/getComparisons.R
a6746de15902d50049421ab86095446d *R/getNewLabels.R
61200f504b22f2c2ed8c84fa6cfe454d *R/getRegionCounts.R
72b738fba12c47009bca384d72acd3a8 *R/kmeansNormalize.R
4f6774e4ee0825fe00880a55261754a8 *R/loadCountData.R
d019b7092c7028b2ae6f33c80b110c4a *R/normalizeData.R
9f4652d02982d98d0608f279bbe9e6ff *R/plotDist.R
d271a3664cdfc027da4d2a514e5a8222 *R/preprocess.R
22d1bbb1039fd16b91c4e06451df5272 *R/tval.R
d881aca40c9934385964b578c0fffaf0 *README.md
6646b0f1315c0ec4bae8744366c39034 *build/vignette.rds
22ea6814c7163fd5a2509c0f0f33f4c5 *inst/CITATION
7edbf1e1dd16d4a33c67d3f944498399 *inst/doc/CSSQ.R
003fbcfc302c80f2d2120759145e8aa6 *inst/doc/CSSQ.Rmd
09841095b37afa68e7b903948b6f907b *inst/doc/CSSQ.html
a8bc2c7f51cf0aca8318e58fd3e21b8f *inst/extdata/HESC_IN_R1.bam
75ae3999af1313ba1ee262363cb9a776 *inst/extdata/HESC_IN_R2.bam
7226b9ae6f21f579df0c050609ae6a03 *inst/extdata/HESC_IP_R1.bam
16476eeac071aa182a02803ffbadd8e2 *inst/extdata/HESC_IP_R2.bam
5726ff5cd38032feda14107560bbaae6 *inst/extdata/HSMM_IN_R1.bam
221bef86d4b36cf9fc5763cce751c934 *inst/extdata/HSMM_IN_R2.bam
3eb0b6539d6a94eeb3935c7b8201d943 *inst/extdata/HSMM_IP_R1.bam
fd8bf511ae61cb241e866aca3b2c1d3c *inst/extdata/HSMM_IP_R2.bam
db8f344327ab3745545cdf399d249160 *inst/extdata/chr19_regions.bed
df04929190fefb9e9dc2c42be319b3fa *inst/extdata/sample_count_data.txt
9e9b628666eb07475fb5f7ecb85514f9 *inst/extdata/sample_info.txt
f95a6a2d82a3e8cd9557d95e0d55cb06 *inst/scripts/exdata_info.txt
8e7951840d21bc54e67f924adc2839d2 *man/DBAnalyze.Rd
0e8c9b972383675a923dd96306829418 *man/ansTransform.Rd
5a8a98f78c4ccae0a7a8f8f8d7dffa82 *man/calculateFC.Rd
993d9d4ae31cf58d57c1c2c9b3df524d *man/calculatePvalue.Rd
e6014e7b78719c070f6887e187641f8d *man/calculateTvalue.Rd
654389e7e683dafa19d00b7224e08fc3 *man/getBgSubVal.Rd
391dfa4066326d2d1c5480e915098619 *man/getComparisons.Rd
c9d23cf901949a7f957ac088c659413a *man/getNewLabels.Rd
c91ba1337ed8cc76581bcca3af253a21 *man/getRegionCounts.Rd
00a621f35c3c4c45ff281727c241b52b *man/kmeansNormalize.Rd
ba05fde6b90403bc0bd60bf5d0df417a *man/loadCountData.Rd
f0187df601c1c8e5bf6d1260e4e870d9 *man/normalizeData.Rd
94562bf1c7492f299257e1d208be4fee *man/plotDist.Rd
16f0e53300766933eb30c075f8a323e6 *man/preprocessData.Rd
003fbcfc302c80f2d2120759145e8aa6 *vignettes/CSSQ.Rmd
