ce0d1bf470cfb534812beb84a3d0eab6 *DESCRIPTION
ed8a61297e2f2d5e4f563fd7f86b5b56 *LICENSE
be77e31cd93bc62c5311a737db5ed0db *NAMESPACE
4e6677da42eae883f3f4c4c018872476 *NEWS
358ae596bfbf88a267949e11d95165df *R/attach_cell_scores.R
ffcb7c8930c1292dc1d0ef5426820c57 *R/compute_pair_scores.R
14fd5df77993884924251ec5f74a1eb1 *R/extra_filter.R
4ea1b01aeeccb125a5c31e0358163130 *R/gene_degrees.R
6ffc56652b86047650f6690042663909 *R/gene_modules.R
fbf9afdb84eb46dd60bdf430386a3a86 *R/generate_overlaps.R
ce7ab4d80719b0b6b03a72da76fa1ac5 *R/generics.R
bf731787acf4a8b352d9bff26dc562b1 *R/main.R
7d3532bfc1f292952d3c7c1635f29996 *R/multiple_testing.R
71f70f2c68cf973f813077eea70769ee *R/percentile_sets.R
bd4b44b0ec0244792a53a333d058b799 *R/process_overlaps.R
296cc6fd027e31797e05a9db0278c19d *R/score_cells.R
3600eee42e65c35f62fad970c2f82c82 *R/utils.R
8a41d5c9596db4b7b55ae75024ed8b04 *R/visualization.R
eb97c68bdc74ade86d0c8a393857adb3 *R/visualization_aux.R
813802b6637ad99602497bb8856537b0 *README.md
eb35eea4d2cf34f4fe271fefa0960994 *build/vignette.rds
cba5603ba879734dae04e4bbd0934097 *inst/doc/Advanced-CSOA.R
795ee9d060554388217dbdc5562fa081 *inst/doc/Advanced-CSOA.Rmd
204a3b32d63e8eceb1c02a984ab00403 *inst/doc/Advanced-CSOA.html
a373cc620aeaa0db082b2ff4c2cf33b5 *inst/doc/CSOA.R
f3c2fcf1f2bc77bf351910fda53c4cd4 *inst/doc/CSOA.Rmd
367972737e47fffdd885a16abde5dc75 *inst/doc/CSOA.html
d3dc9b05dd5933a05b6d7bdf8c45675f *inst/doc/The-CSOA-algorithm.R
8996b3f7553fa2f429154a65ed23e5cf *inst/doc/The-CSOA-algorithm.Rmd
4c66562149a285e128fcf87d4d1afbda *inst/doc/The-CSOA-algorithm.html
5bd3f5389c9fa3777f5203a95411609d *man/attachCellScores.Rd
9dc94a5a96a912b10cc4327d6da6f516 *man/basicHeatmap.Rd
1e4bdd60c854841b29086469f745995c *man/bfCorrectDF.Rd
ecb502785d271cc0880eb19da6361cb9 *man/bhCorrectDF.Rd
bb89d8c5b1f2db2da00ee32b6ed0ea43 *man/breakWeakTies.Rd
7f08d07316dc40a733e587010985887d *man/byCorrectDF.Rd
8c20c68aa48f0cafd89051479e35aea7 *man/cellDistribution.Rd
1be284883174e055f0a382d1bee95773 *man/cellSetsOverlaps.Rd
a84c75cf31666f7fee27cc61fe87c388 *man/computePCPairScores.Rd
9eabce5db4fabb6cf31ab2c0a3daba62 *man/computePairScores.Rd
949e65b876ee363814ac9fd6d5bc5fd2 *man/edgeLists.Rd
77c85b382b37ed2a3ea15c440f8cf038 *man/expMat.Rd
7ce5849765fe3284a15daa4fd5ab4049 *man/fdrCorrectDF.Rd
a340f8401395265bc51fc98578a00a87 *man/featureWes.Rd
4fc19ec53f20569ede17b724e91ac429 *man/geneRadialPlot.Rd
676bb647a40c45db5e97808db25e0035 *man/generateOverlaps.Rd
ecf6cf48f46dacb3c992a7222e5c1740 *man/getPairs.Rd
87b2c89792b7512979c549e12e5bdcbe *man/mtCorrectDF.Rd
6d814c783e404d4705a005bd13af8757 *man/networkPlotDF.Rd
6fb204aea1b45ac89c9805528b10f276 *man/overlapCutoffPlot.Rd
67deb278f65cec1a18827c5105b3294c *man/overlapGenes.Rd
bc7c85a3bf7de9deb0a47420dab6dbc4 *man/overlapNetworkPlot.Rd
a815b5977b87c7566d663efc584cf229 *man/overlapPairs.Rd
739aaa2fdec08568b149ba74f983fd9e *man/percentileSets.Rd
9eeee36e4839069a59694daea785e776 *man/processOverlaps.Rd
c62761fac848c002eb70d0a3b7a8b031 *man/qGrab.Rd
b6f23643a9cc51619708adba76137435 *man/runCSOA.Rd
c3b72fec71b919644d707c5b3469d164 *man/scoreCells.Rd
64fb63a1f0525ef406c7027ac6a2c423 *man/scoreCellsCore.Rd
1f01b992a54b7ed3a5cecdef9e401e5a *man/scoreModules.Rd
93e0d53ad21a2068930dbf1b2a6e3f7e *man/wesBinaryGradient.Rd
6644c8a70b473614e34d00e27519fda0 *tests/testthat.R
252e0d49fa693954fbaad756db067252 *tests/testthat/test-CSOA.R
795ee9d060554388217dbdc5562fa081 *vignettes/Advanced-CSOA.Rmd
f3c2fcf1f2bc77bf351910fda53c4cd4 *vignettes/CSOA.Rmd
8996b3f7553fa2f429154a65ed23e5cf *vignettes/The-CSOA-algorithm.Rmd
