384ddbe48d070a657a46a9d566833c2c *DESCRIPTION
fefc4e3279c4d95f6090072353db6dcf *NAMESPACE
75e7be7392b66542f2dcb43212cd918c *NEWS.md
e9bad78be1938ba65cb8f04df0e7fba4 *R/AllClasses.R
f8e8d4412db635169194d9917d0ce484 *R/AllConversions.R
2fcab7a0c933c5996aee89c39f4c7755 *R/AllGenerics.R
2c46f2314ad1122836dd149b4110ce90 *R/COTAN-estimators.R
b4c87bd23105ff738e528891dca15440 *R/COTAN-getters.R
5eb809f9fa24cf00e636ac890692999c *R/COTAN-modifiers.R
f8d931552fef52d8a67911d6dd9f3c51 *R/DEAOnClusters.R
64621aa4310565d8313639e296bcae61 *R/ECD-plot.R
89c2f5c1f7ba788705e408b037ec2dae *R/GDI-plot.R
caccd7704e8cc61b6e1e760e6fe95960 *R/UMAP-plot.R
205d5c6f9ec72a65ec82c4670f1edbcf *R/UTCheckers.R
0187df2cb94a967dacef39beb3222678 *R/automaticCOTANObjectCreation.R
5481dd7a7c5d59c5225d37fece0cd269 *R/calculateCoex-method.R
77c44fb0e6b098b20afaad14c01f73ea *R/cellsUniformClustering.R
0b10d1711f21f0cd386b8c230631cf5c *R/checkClusterUniformity.R
a39f92c861898d2bb8ef0ab96e07157c *R/clean-method.R
3d1fab4920581d566da5988a0b13e9b7 *R/clean-plot.R
f7d825e07ff79e4748fdb10e437329b1 *R/clustersDeltaExpression.R
d6066e1ac0226a4a22edab0cf6768bb9 *R/clustersMarkersHeatmapPlot.R
b3470c96f3c76569865db4d875911ac0 *R/clustersSummaryPlot.R
15a8a82ebb11d830d609182d5dcb0d19 *R/data.R
af7ea02bea1e763940474a77db1a9b95 *R/establishGenesClusters.R
42e1113f7ed9bb916d66dd9c57955c29 *R/findClustersMarkers.R
cc0c46f3c310bc24caa040260d821e8e *R/geneSetEnrichment.R
ca44d9278479981d7c6b8d9981079d25 *R/genesStatistics.R
7bd20aa8182138bcf28e3069ba568020 *R/heatmap-plot.R
b0bf79ad4d72d307d3ee294f92f26bc7 *R/librarySize-plot.R
2e3ad13d4117581f6afd89a2428b7ced *R/mergeUniformCellsClusters.R
e768365bcc57399fd7adafdcad8605cb *R/mitochondrialPercentage-plot.R
01ebf03ab2b2ca0ee49c2436ad22629f *R/numericUtilities.R
9ff3706cca6be81e88a5f083f355c65f *R/reorderClusterization.R
1068305d4021520a749492306735b8bf *R/scatter-plot.R
f63be8bf72178ce715c124034957b1af *R/utilities.R
9adbe0b9795165a0c1ce106c8f0184c7 *R/zzz.R
58967b126e12ced59b7016036432b640 *README.md
7af29306cb67aa5de468f8333ee0593d *build/vignette.rds
595f9214bad582690e3bae1bcafba8c1 *data/ERCCraw.rda
0e807416a239f94975353f0ca95929cd *data/raw.dataset.rda
178a6ecf860256469328d3c12389f76f *data/test.dataset.clusters1.rda
a73dd3ceaef02ddf28b52cf2d51eef76 *data/test.dataset.clusters2.rda
2c3ad85a3ddd8c2dbdd676f5e0f57617 *data/test.dataset.rda
d651c8c4a65415d91aa17e4489838660 *data/vignette.merge.clusters.rda
029d4f998ff4fa6deccf27a9d91b410b *data/vignette.merge2.clusters.rda
edfa6ff08a559887083b011e9a2a847f *data/vignette.split.clusters.rda
244778f2ad4bdd3340c7d3ad8f4efc52 *inst/WORDLIST
4dc1571c9b61a8e1f3979c698bd517d8 *inst/doc/Guided_tutorial_v2.R
7673cc5733fb3afbe9f7d54d23110455 *inst/doc/Guided_tutorial_v2.Rmd
f8c11e63ba34041f4b4a991fb89da59e *inst/doc/Guided_tutorial_v2.html
81e279b7e7fb22c4330a7682b3a16f68 *man/COTAN-class.Rd
57cedaa6d9ae8ea3c5ab2c7195a92fd1 *man/COTAN_Legacy.Rd
c6380dffa127e091118353d09265de1a *man/COTAN_ObjectCreation.Rd
8bb50117c6214760a4dc96077a53eab4 *man/CalculatingCOEX.Rd
edc118d977890a900898683ae7773ae2 *man/ClustersList.Rd
fb6409b958197b104d879160e23e9982 *man/Conversions.Rd
ace5c22e1520bda8214a9273379469d3 *man/Datasets.Rd
d65889a49413cebd9ef0e8b5f6d3b398 *man/GenesStatistics.Rd
26b0a16ed6f81b7af8131eb2169a5ad9 *man/HandleMetaData.Rd
c38b400a4aa0391b6e48bdba6478a246 *man/HandleStrings.Rd
08c4bffa2683d841b478f88805226c5d *man/HandlingClusterizations.Rd
aea25124e1c4b9c34713d4267c227125 *man/HandlingConditions.Rd
0869a45fc85a72b703e9f92ccb30e1a8 *man/HeatmapPlots.Rd
ac9c3391aca8dadc960c0ac870e2f2cf *man/Installing_torch.Rd
6409655dd41b725c2f01a868150326a7 *man/LoggingFunctions.Rd
ad31732543ace549bca7e19f87f20a5f *man/MultiThreading.Rd
ad836f6e20979c3af718c5295898ea89 *man/NumericUtilities.Rd
29ae68e8faef1e65deec0656d5954cc1 *man/ParametersEstimations.Rd
33a8c26e78f4d463247e2779a0184cb6 *man/RawDataCleaning.Rd
910a6d98c2d8c642a297490aafa459ee *man/RawDataGetters.Rd
45ee38c945262d41636e1e61debb0d31 *man/UniformClusters.Rd
b8751ae79fea1447b6e7de6128d77c0d *man/UniformTranscriptCheckers.Rd
8f416ea18a4edc9a6e3d8fa572c14400 *man/getColorsVector.Rd
cc6c95c2589245a2e762a56a12b64f14 *tests/outputTestDatasetCreation.R
2926098c9266960cfaf9613ac0af809e *tests/spelling.R
f431cad1258c651a61e54b5873668dc3 *tests/testthat.R
821df3e43742b8383912a1a3c76970a6 *tests/testthat/GDI.test.RDS
5618a4433a05e8fc5a00682cb55cb7f8 *tests/testthat/cells.names.test.RDS
2daa6bdfe9d2cd411aca4c5a9a3c15f2 *tests/testthat/coex.clusters.test.RDS
de7435db845a967334f0958e9d35342a *tests/testthat/coex.test.RDS
ece8076afcbb33dfb3a1460242059d32 *tests/testthat/dispersion.test.RDS
b8c49bebb7e5b3442da927a2d505abec *tests/testthat/genes.coex.space.test.RDS
417faa01a2fabdd059a906eb71f6c8fd *tests/testthat/genes.names.test.RDS
4fad7e3f43bfc852ce46af81c4508502 *tests/testthat/lambda.test.RDS
4a03977633cb37a6cae24868fba15fca *tests/testthat/merge.clusters.test.RDS
41e09492858cb6fda8aea7f20b5559dd *tests/testthat/nu.test.RDS
2c91eda1b9a3496cd71482250cd93471 *tests/testthat/pca.genes.clusters.test.RDS
6c4e18aca4e11baaaf3e60e472db2ffb *tests/testthat/pca.raw.test.RDS
b436fe7022e1acb7297bc2185c39d065 *tests/testthat/pvalues.clusters.test.RDS
45ca14c8dd521f3af7acc95d6db4b3f2 *tests/testthat/pvalues.test.RDS
b074a8bfbb6aac23ad006d065aa56832 *tests/testthat/raw.norm.test.RDS
85495c6fb3b9b56d00a4e1379d1f4fc8 *tests/testthat/split.clusters.test.RDS
18dc1b560f668a4b1cd0c31d55732f50 *tests/testthat/test-AllClasses.R
273dd4e7406a7b2f8e86e72b73824ef8 *tests/testthat/test-COTAN-estimators.R
545819d6bc44a4c91f5bd2c3841cbf95 *tests/testthat/test-COTAN-getters.R
ec7857b29c96015e16ca95016e0cb2f3 *tests/testthat/test-COTAN-modifiers.R
508ef41010d70567c0119d7b2b2a4c69 *tests/testthat/test-calculateCoex-method.R
422a2b6edb1ecdee8cfd4f15d16be67a *tests/testthat/test-cellsUniformClustering.R
8ce87c1d568ef9ca48cfeb317d299837 *tests/testthat/test-clean-method.R
3f5b294eb0b4f6660ca8291434145c21 *tests/testthat/test-convertSingleCellExperiment.R
34567a8f1d531d703d0d7fba050ab458 *tests/testthat/test-establishGenesClusters.R
69ad43748f60d87dcd77163835bed3df *tests/testthat/test-mergeUniformCellsClusters.R
e5bc6bf7dc2af14bcd82ab3d3e02b32a *tests/testthat/test-utilities.R
7673cc5733fb3afbe9f7d54d23110455 *vignettes/Guided_tutorial_v2.Rmd
