83efe6ef99e24ed2ec5027f732d1aa49 *DESCRIPTION
2badde7146058bf8e3cb42c6a9a7f145 *NAMESPACE
b7bca2119044e100b779753a53f8545a *NEWS
dc920922ea73f697cf9611f50e0ea4b9 *R/CNVRanger-package.R
c90cdb0219c982c270329a167f034ea4 *R/expr_assoc.R
e3694e1e90dbc6f111982009c9939a57 *R/graphical_representations.R
48397fd2f6644c4686dd2561074ab660 *R/pheno_assoc.R
fc4f53c7a43db6d86411586bbc512d42 *R/population_ranges.R
3cd03f0084c62f81e781dd5eb1c14430 *README.md
8377afdc87cb7f0b788942dbcc91eecf *_pkgdown.yml
d5600c982551df83e189480372079390 *build/vignette.rds
6860b8d3a9a15e8882bd37d9ecf96e84 *inst/CITATION
9ffed82adec7d50b5ddcff93eeb0077d *inst/REFERENCES.bib
b30a66874f636e55c64a00c8e37e3ef2 *inst/doc/CNVRanger.R
a04d5baf1ca5eaeec0b731d5edc4adbf *inst/doc/CNVRanger.Rmd
8de7409624a0866c163dc10d39772d1f *inst/doc/CNVRanger.html
c5343759f0a014da9875d14a7fd5e5ea *inst/extdata/CNVOut.txt
6a58cc97f0bb5d688240766564d61505 *inst/extdata/CNVOut_noMap.txt
9fe14aa70e860411803e7e5fb8b4ea7a *inst/extdata/GBM_GISTIC_peaks.rda
9c8027d08167db5252c991b1dcb96036 *inst/extdata/GT1068.cnv.txt.adjusted
b191da6c9489316c6d41eca48e2e9b54 *inst/extdata/GT112.cnv.txt.adjusted
ee407d24bd87142ff186a15045548d30 *inst/extdata/GT1195.cnv.txt.adjusted
6d46dcf9dcac4c7d127501bdfc7de7c2 *inst/extdata/GT1334.cnv.txt.adjusted
4dcf5ee8095c2fbf4612a3bdd9fc40f0 *inst/extdata/GT175.cnv.txt.adjusted
c6185eafc72d3d819460c3cc76f2eaa0 *inst/extdata/GT2391.cnv.txt.adjusted
3c6f17d1bef6e7137947130544e701c5 *inst/extdata/GT356.cnv.txt.adjusted
d73a6e9724d76401baa764f5982d5d4c *inst/extdata/GT546.cnv.txt.adjusted
b9057b3b49ba9b7e00cd700b5a62baf2 *inst/extdata/GT622.cnv.txt.adjusted
c75dc60c5e0f7e78b07e27c1dfa76ac0 *inst/extdata/GT911.cnv.txt.adjusted
a7f3a9565266e574843aa3a283f338a4 *inst/extdata/MapPenn.txt
cb9d4d13fec59d74e29260269e67b1a9 *inst/extdata/Parus_major_chr_sizes.txt
28e2929428ea10c848180497bdfdb91d *inst/extdata/Phen.txt
860143afea52eebff90414d2150a9619 *inst/extdata/Pheno.txt
1b7378e5c916b7a805ab299fc608a8ff *inst/extdata/Silva16_PONE_CNV_calls.csv
189ff3fdc582d0a5582245d3e9c648e9 *inst/extdata/counts_cleaned.txt
d349a711f737f76907a06ddec3ea0004 *man/cnvEQTL.Rd
1f2ab294a31a5fc7fe80e5a8e033fb3d *man/cnvGWAS.Rd
e1f8ad5056359f8e7ddb951ebf4ea3c5 *man/cnvOncoPrint.Rd
e0b9bfc0963880df0207ebaf73aba5a8 *man/figures/CNVRanger.png
034ae3351afb42a7975e3817f38d5ea0 *man/figures/CNVsegments.png
c49d479e5c97b8ab9d441dcc3e0c3420 *man/figures/Expression.png
3afbbc51fa5423bda827fef675acdae6 *man/figures/Input.png
3c482e35f515ad3370f4e28e25b3d0f4 *man/figures/Overlap.png
f557c49e6a8636491e7994d852c31992 *man/figures/Phenotype.png
08af82bda00ef3001e376aed18fb374d *man/figures/Summarization.png
3cf4ac38903f82c9cba6a9ae6f9de823 *man/generateGDS.Rd
b141389cb56f853e979466bd3ef60f1b *man/importLrrBaf.Rd
d886fb32482c6af8efa67bb63d0feda3 *man/plotEQTL.Rd
d3577ae0f8e3214f43a34b47f6b3fc49 *man/plotManhattan.Rd
eeebf3f87b12db39f78b72df25f29aa1 *man/plotRecurrentRegions.Rd
073f9fb332249b01919dd40318f787c8 *man/populationRanges.Rd
a216f297e98c6b0953d351dcf3392d7d *man/setupCnvGWAS.Rd
a04d5baf1ca5eaeec0b731d5edc4adbf *vignettes/CNVRanger.Rmd
