cbba20d175ce89dc8320061411ee3fbf *DESCRIPTION
1df7668ff683f89b70738475d5c2e98b *NAMESPACE
6a714f90d5c1e274014301accb2f11fd *R/createLBodeContPars.R
27e2a0ec05e8aadb7917f59ed4e72232 *R/crossvalidateODE.R
4f3d93fbe9ba2bda3cf6cde5a708c6a9 *R/defaultParametersGA.R
7c774bb75e1e07a6e89d25c8adcfa86c *R/defaultParametersSSm.R
10a51945f0259a1b8a7d1515623969ef *R/getLBodeContObjFunction.R
95f629a87ee8212b094db968ece95ce4 *R/getLBodeDataSim.R
9ba64b6041b3dd0c9937d4857ec393b5 *R/getLBodeMINLPObjFunction.R
46642af05cf96a7d664bb46bd29ff952 *R/getLBodeModelSim.R
a170e494cd2c15f5dbd508dd8c0a17fa *R/getLBodeSimFunction.R
0a473d783c3d5854e5f3db4f5bde2b35 *R/getStates.R
997ef5d6b55d8c04f9d107aceff23440 *R/incidence2Adjacency.R
34c4f07d8e9444b50d3489fcc52972af *R/minlpLBodeSSm.R
6066c79c4b7ad371060c9acd5bd94d65 *R/parEstimationLBode.R
1d0ca9c041914260df62f8dc115138d1 *R/parEstimationLBodeGA.R
f19d01aca0cb0441b3cff24460e76cd1 *R/parEstimationLBodeSSm.R
5df063bd07ce551594c04b87977b34ce *R/plotLBodeFitness.R
474e44a2b178399236884f17ffe03588 *R/plotLBodeModelSim.R
9efc223aa48ce6d9316580bf482f8ba8 *R/runCNORode.R
084e3c096d0eea9117db3ec2462dfa43 *R/simdata2cnolist.R
64321b66e287d619e4757a1d6f221e3a *R/simulate.R
8480ac71322a313d70e9556e7bf323de *R/zzz.R
d0cc059b01594014247fc6c5d2d0214f *README.md
3cf73c1446dda9106aa41f22a54d3d4e *build/vignette.rds
a3ad2774d4f61055c332ddb55bc303be *data/CNOlist_ToyPB.RData
81b2ffa62bb986c5b418b99eb9a28a2e *data/MD-ToyPB.RData
064736c560edafe75644f713412de9b4 *data/PKN-ToyPB.RData
064736c560edafe75644f713412de9b4 *data/PKN_ToyPB.RData
c0926e90cd04e31023388088e315ecf8 *data/ToyCNOlist.RData
1543417eda0f4c7c55419b116bd42f9b *data/ToyIndices.RData
ea132b18d8aafd5cd2a1153b47c80bf6 *data/ToyModel.RData
038cfbdd51c1f22ce35da96c975f4d93 *inst/CITATION
44737850f06af03850fce1285c6c1f81 *inst/NEWS.Rd
6b10b5573b321e9d1409f8ebe8c64723 *inst/doc/CNORode-vignette.R
d098214a5b6d39a022151534093916bd *inst/doc/CNORode-vignette.Rmd
7202b3bd576443c270683236e4a69028 *inst/doc/CNORode-vignette.html
6a2ea0509d9c0dc25ffd4c5836875c73 *inst/extdata/ToyModelMMB_FeedbackAnd.csv
43cade3a8b3b9927ace7ac8bc24393c3 *inst/extdata/ToyModelMMB_FeedbackAnd.sif
34fca9fe97d75cdadb1f8c4b63d06bad *man/CNORode-package.Rd
624b874d8677b02607f2baa074bda274 *man/cnodata.Rd
eaadeba300dd84147cb1d07f87bb0b8d *man/cnolist.Rd
7d69a09b932b55218ee9accd6239ac0e *man/cnolistCNORodeExample.Rd
bc1d27e3a2bd80128b664efaab47f253 *man/createLBodeContPars.Rd
f2714c7d96383214ddd29201bd088b50 *man/crossvalidateODE.Rd
1048a550d3a377b642b2ecf10110fb4b *man/defaultParametersGA.Rd
281944aac19ee5bd91c71d646dec3dcd *man/defaultParametersSSm.Rd
8afe60a4f5c8246b7c15d88c1af5a164 *man/getLBodeContObjFunction.Rd
8f4c23ce19b82508ff0dd2c25ada3f16 *man/getLBodeDataSim.Rd
c6d8a084fd2902cdcdcb5856e42bd0c8 *man/getLBodeMINLPObjFunction.Rd
c46de850a5f99117dce88ae3f5a7f04f *man/getLBodeModelSim.Rd
8feb9e1e795623ed2a08f48ac03896eb *man/getLBodeSimFunction.Rd
0927697e65166dd54429a9fee30cfe3e *man/getStates.Rd
4770c478570cd0a065907cacd3874419 *man/incidence2Adjacency.Rd
c3a48f2fa065d8e2890118ea463d6c99 *man/indices.Rd
5ecfd5c2bec853b3082ed9b8cc8fb76c *man/minlpLBodeSSm.Rd
f0e0b1b96c854d262c8db232299ecf14 *man/model.Rd
e5650703e4dec687430f83361d412498 *man/parEstimationLBode.Rd
ac3b1e758d0bc97ce304757f8ded5cad *man/parEstimationLBodeGA.Rd
a5a1ba3f3f4a6785b2f94fd6d5099a56 *man/parEstimationLBodeSSm.Rd
b151ecfed8156a6b5c4b0e72ed011d32 *man/pknmodel.Rd
740b085f9f01e0b1ae666becbc34f2c7 *man/plotLBodeFitness.Rd
d79b66adc080a15198b69d7dd73bde16 *man/plotLBodeModelSim.Rd
5482a6f716d999d95d6ef1ae759d6a7b *man/runCNORode.Rd
65ceaea95e601301af145a59208c7f55 *man/simdata2cnolist.Rd
deb4c5e43568643e8d898b5bab737ac2 *man/simulate.Rd
5f1315adaabbd81016740cc6684f17fc *src/CNOStructure.h
ad9019d5f4ae36f4fabb5a259ab94d77 *src/FG_transfer_function.c
2f79bd03d73551c4e27bfc803f958d5b *src/Makevars
8c2b516208bd032dd7af711bc652dde9 *src/Toy_Model_MMB_Feedback_OriginalPars_C_test.h
1619fd60a17a9867536aae57537a5b5e *src/cvodea.c
8ab30d7acd892a7d043f16acc3f7a893 *src/cvodea_io.c
ef56c638f63092b9c5b4119146ffa2b5 *src/cvodes.c
325fd5870ff783a1a91657d1b84f0012 *src/cvodes_band.c
61268c77837fdc9d6fb398adb2854a45 *src/cvodes_bandpre.c
0e39bf8ffdfdcf12cc09b28831e65d93 *src/cvodes_bandpre_impl.h
36fcbda0eb978bdac26e9b4aafedbd06 *src/cvodes_bbdpre.c
7a1b0325436a85ecfb9090c3732abe8c *src/cvodes_bbdpre_impl.h
d5037b2407d74658b007e81cd6f1dddf *src/cvodes_dense.c
658e9f1e0414f58e922766c3c172e242 *src/cvodes_diag.c
3656e37b3e1eb2e85fe15be0f76672c2 *src/cvodes_diag_impl.h
df1a4d2ec98dad17c07553ef43d871e2 *src/cvodes_direct.c
923235d00bb6f4fb7c1d58f162a962d4 *src/cvodes_direct_impl.h
78eafd482c89a57df782ea4087ca9156 *src/cvodes_impl.h
a2ccf4c9ac6ce6f2401bb61c644b16ab *src/cvodes_io.c
205a31994804c918fca393dab5f0ee17 *src/cvodes_spbcgs.c
5471335e0310ad8a20ab7b809216adfe *src/cvodes_spgmr.c
1ca248d4f509133de8017c80adb2b2ba *src/cvodes_spils.c
1280ff663f3dd87bd6c1b2e5748468c9 *src/cvodes_spils_impl.h
772cc380e7401dbf342ed1847a631656 *src/cvodes_sptfqmr.c
7d2dde5bf940aaa3a9f35e54141efc99 *src/decimal2binary.c
15972da7fce165e2bc2200e92d7039bb *src/findStates.c
18b52977515bfefe37c9bdd87627104a *src/fnvector_serial.c
9afd3dff60121f884683914130df4935 *src/fnvector_serial.h
1e29a06b49c9a1d36e84daf955eed394 *src/getAdjacencyMatrix.c
cf390ed2834c37bb7c9a691b441707f9 *src/getNumBits.c
0be5019aa5354b2ed55465e51e4da679 *src/getNumInputs.c
bcf3f072553b8e4d707388c9caf1dc6e *src/getStateIndex.c
a4d75f7e74be11d976a8aa41c0def854 *src/getTruthTables.c
c42afe7cdbe0dd090771786046f24f7d *src/get_count_bits.c
873ec8b506866c829432ca17cb094d9b *src/get_input_index.c
430e1ce5acb3eb5f92bb3c1a45c52dd9 *src/get_support_truth_tables.c
145ed13be89ab9c285e9bce2ab48956f *src/get_truth_tables_index.c
86a75c2f6b46dc54796b34e595cf16b7 *src/hill_function.c
b4a10eb4d5c667fd9e3cb8ac899927f8 *src/include/cvodes/cvodes.h
1cc2f065c51af65267b297989ff12fc1 *src/include/cvodes/cvodes_band.h
d366f3e849183b9a72ec22bfa4c4da3b *src/include/cvodes/cvodes_bandpre.h
8b3de22a66b7e34c948093c63df2d4a2 *src/include/cvodes/cvodes_bbdpre.h
8a16f1515e71bf62249ad3100cbd84f4 *src/include/cvodes/cvodes_dense.h
1a1c9da17d8740a19364634cb6e0d249 *src/include/cvodes/cvodes_diag.h
8fa5598a5f7a70bcde4548844b8ccc58 *src/include/cvodes/cvodes_direct.h
07440b52f17edb7d96f23e135b2db205 *src/include/cvodes/cvodes_lapack.h
17b6e67b21cd1ae8866488b922c5f151 *src/include/cvodes/cvodes_spbcgs.h
fc748bc043804d9212e88fc1c5168198 *src/include/cvodes/cvodes_spgmr.h
9238e19eae24dcc48726a4f002665b3f *src/include/cvodes/cvodes_spils.h
8ff50fbed169fad15b09edba6b544a2f *src/include/cvodes/cvodes_sptfqmr.h
258d93b83b5d679f6412af2c0da403c7 *src/include/cvodes/desktop.ini
258d93b83b5d679f6412af2c0da403c7 *src/include/nvector/desktop.ini
55ad127c944bdac98fecdeac8849e0cd *src/include/nvector/nvector_serial.h
258d93b83b5d679f6412af2c0da403c7 *src/include/sundials/desktop.ini
98ff7ff47b9d45a01754b76755d91948 *src/include/sundials/sundials_band.h
2597e7c934208db4d8b2b85700916a49 *src/include/sundials/sundials_config.h
d71ebc42bfb945abd04b368af303519b *src/include/sundials/sundials_dense.h
97591cd0677bb1daeb632b1cb19a9973 *src/include/sundials/sundials_direct.h
f05b069fc2b391b7c0ddfb96d5437818 *src/include/sundials/sundials_fnvector.h
32b839054c50bffaa1a5656ae2b59050 *src/include/sundials/sundials_iterative.h
7c346727112c12dfacb30c9539c2d44e *src/include/sundials/sundials_lapack.h
9b1074efcc3bd6e8a23b93316792cb5d *src/include/sundials/sundials_math.h
1e372eaf9fcbb2231219582aff3ab336 *src/include/sundials/sundials_nvector.h
66aeb882475f1d664db9cd625a9b3319 *src/include/sundials/sundials_spbcgs.h
28d2003adef6e0325033594d09ad3907 *src/include/sundials/sundials_spgmr.h
1fd16ff5545397f66e8086072c860ffd *src/include/sundials/sundials_sptfqmr.h
72da51ac81a3f0ad63be0aab511674a2 *src/include/sundials/sundials_types.h
87873807dcd1af920771b54a06055dfe *src/linear_transfer_function.c
cdaa15d49ab157e5cb1eb389e962e980 *src/normHill.c
60d71c4f7dfb42f95081949530546193 *src/normHill_mod.c
2a427e12f2f45e9542f11ee9b11751b9 *src/nvector_serial.c
5ef537dd02cf4636ebf0fa233c127d2e *src/printAdjMat.c
0adad377a800d1dfd83edb422a0c9cc7 *src/printInterMat.c
6725ee2c7c76ac25bcb820fd8495f56e *src/printNminiTerms.c
70b674812dfb8df7444a3564de6d053f *src/printTruthTables.c
a5e157f5ae3eca53c6a09305e60110f3 *src/rhsODE.c
fc3c2bf34204bcb2e12b758d57e42d9f *src/sim_logic_ode.c
9cdc30fb6bf776e9a8fbe2ae5f31ae24 *src/simulateODE.c
68b5c40c2827908ee5c9775101c0cc78 *src/sundials_band.c
5099da3493ccc2e720aea2b09347aae8 *src/sundials_dense.c
928e4721bac0ebb46b11ba22ea081a17 *src/sundials_direct.c
ef9786b76101e83d6275f9a5425d12e7 *src/sundials_iterative.c
dbd920dd80199a1a4fcf14be9073bec5 *src/sundials_math.c
c3a50a42ac51023aa45ce51d8a3efc1e *src/sundials_nvector.c
fa9be7c183e20f23a61823f60fd9cf8f *src/sundials_spbcgs.c
d0d3dd42a6198926b739d9d7b83532fa *src/sundials_spgmr.c
cf8e57183db0e8979cf42225ed31790d *src/sundials_sptfqmr.c
d098214a5b6d39a022151534093916bd *vignettes/CNORode-vignette.Rmd
35f5da4f43986532496b860afbffd7b8 *vignettes/ToyModelMMB_FeedbackAnd.png
cf593de7c4467ba91c260a18405db190 *vignettes/ToyModelMMB_FeedbackAnd.svg
3f465007ebf3b672e7256e30b92779ff *vignettes/comp_tex.bat
077dacb78a9518c4e073670a009e6845 *vignettes/data_ToyModelMMB_FeddbackAnd.pdf
