48330d02c7425a5468a5019c1ddec995 *DESCRIPTION
5b41d3be7a6fc243eba52d5ae0486e70 *NAMESPACE
8b65babaf5d466eadf0c0dbcf1667d69 *NEWS
10b27d3e81c540597eb7cd87566bb58a *R/Binference.R
2c6f11bfc3ec87f911514cebe39f774e *R/MIinference.R
613c4f196792167cbbaf871026bd8aa7 *R/addLink.R
0ac27671d6ea0e382c81cf07cbb82aa4 *R/addLinkAND.R
a5f2c3381beceed23b7dbb575abd8f3b *R/buildFeederObjectDynamic.R
23a6ec948274a183b6b36d3a782f06cd *R/computeMSE.R
3cc509821d847b58225dc95144fbfa31 *R/computeScoreT1W.R
d9bda972892aad7999a314f8d7791c07 *R/cutModelW.R
787f8219f84e6f2d500b3976171c2e3e *R/downCueGraph.R
26e4f212773de9cbac8e5aca960f34ae *R/gaBinaryT1W.R
0407f880b5345141b4e0b616d0408380 *R/getFitW.R
19a3744adb46583021dfba65e8fbbb40 *R/getLBodeContObjFunctionWeighted.R
78f2340b51a0aa40b5300e355d9c90f1 *R/identifyMisfitIndices.R
a37eb2a03f3056e67b3f99131b03dd59 *R/integrateLinks.R
f58563065aa9b3705af2aac07f1378aa *R/linksRanking.R
0f788911e54f2266c82c13a540ed7eb1 *R/makeBTables.R
907efbc262a727f87c5091ae747c8a45 *R/mapBTables2model.R
0df65d4e5b0eb2bf07762a4135cff9e4 *R/mapDDN2model.R
da6a2e1e2ef3c52dd0cee183685d171d *R/parEstimationLBodeSSmWeighted.R
def92d1710066444b38131e07406af22 *R/parEstimationLBodeWeighted.R
e3983b80c40ed3723de9e73db4ab625e *R/preprocessingWeighted.R
0d29da1a2c127aa4548a4ae259f7f039 *R/runDynamicFeeder.R
0e1c707868ad2a93db79590f7242bee1 *R/searchLinkGraph.R
598a67ce31383f88fc914a3b00c32ea9 *R/searchPPIigraph.R
f1063531100f1516570f96aa1341af11 *R/upSignalGraph.R
4f064440a3bc7d7cc04b9f0c2e2fd30a *R/weighting.R
d784fa8b6d98d27699781bd9a7cf19f0 *README.rst
f21bf49ba2036af134985812a905a70c *Readme.md
9000c10650008cfa166793a9716700b5 *build/vignette.rds
bd48096e04cf7712e333e0b77d482a75 *data/CNOlistToy_Gene.RData
8ff22f3b06f61eea11178c3ec5b7ac1e *data/PPINigraph.RData
6c5070fdcce074520bc35fb37b5192bb *data/ToyModelPB.RData
81b2ffa62bb986c5b418b99eb9a28a2e *data/ToyModelPBCNOlist.RData
11ad486a0aa85dfad3d3e3593f798059 *data/ToyModel_Gene.RData
23939eb512ac1a8d72b7fb0cba171d59 *data/UniprotIDdream.RData
fb882e13bce2ee322bfaeeea44926841 *data/database.RData
719fe45bce5bb8ab115fb39a3bfec851 *data/feederObject_toy.RData
3e85f0b6cc88ec1ae5af397ecd2e41d1 *data/indices.RData
24c17cf4bb166fe26890cc93928a5982 *data/integratedModel_toy.RData
6e5cfe3691a406ac6a46173ccb3aba7c *data/simData_toy.RData
489d50da30f81b037104d00bc44dcba9 *inst/NEWS.Rd
ef0f5a9acebfc2489e68e868c7eda8af *inst/doc/CNORfeeder-vignette.R
d4e2f9aa2fea9223471a917bfffd06ae *inst/doc/CNORfeeder-vignette.Rnw
589ec2ca7d1c29a16f17e0fe0c82f847 *inst/doc/CNORfeeder-vignette.pdf
394e4ba4710b63877019b046c5f06dba *inst/unitTests/test_inference.R
c47a958eae2c95b8381aad70f2c86ad5 *inst/unitTests/test_integration.R
70fa6792abb5d12f42dc9938f0fbe479 *inst/unitTests/test_weighting.R
241e9bf55c80adc8d25e2f0d1f6a02c3 *man/Binference.Rd
037d4c978bb6b8b160741bcf09f0f3c7 *man/CNORfeeder-package.Rd
60e09d41a9b94bf930e3fec5b54d1b51 *man/MIinference.Rd
1b0a16588871ff485fc252d9c9e35d59 *man/PPINigraph.Rd
bb0cdcb5b601f3906097290a38b09fd9 *man/UniprotIDdream.Rd
0e5ec806c942a03405d6f228d60eeeea *man/buildFeederObjectDynamic.Rd
30ff9e577790ab3d6b951d04da329e66 *man/cnolist.Rd
558420423c0404a29e33048994f7fac5 *man/database.Rd
07055add25a9a1759a24360cc13a7eb2 *man/feederObject.Rd
6058eb55683b17df2b8a46053ec7b973 *man/gaBinaryT1W.Rd
3a333147edd1f7978338ec9e715fe716 *man/identifyMisfitIndices.Rd
bd49410f783bc05bcb33c97acec4b631 *man/indices.Rd
249d30981b6382e7d2bf24be1236865b *man/integrateLinks.Rd
5a0ab25fbe24e60d7cadc9453d85a319 *man/integratedModel.Rd
6aefaaef50e922051976329cd6f00118 *man/linksRanking.Rd
261b4d9fd7492df6ee3aa98746eadb10 *man/makeBTables.Rd
21c455da4c13ec8ba95650ca4f18f775 *man/mapBTables2model.Rd
2ec9e43deb82f955dfa687f640bca174 *man/mapDDN2model.Rd
b8b967e5489bbe7ae7db972777e4355a *man/model.Rd
ac9422856484acc75a3b840de114b0d7 *man/runDynamicFeeder.Rd
e1650d58ffcd73fc0068e50c3f00f503 *man/simData.Rd
9af6c03cda8c7778ce527dcf1ff2fec6 *man/weighting.Rd
2092ea4832c487f2722257152fc4f85e *tests/runTests.R
d4e2f9aa2fea9223471a917bfffd06ae *vignettes/CNORfeeder-vignette.Rnw
4c237de5b038393995e31ccd99cffdc0 *vignettes/DDN.pdf
2de1a183e0df46c4869ec4085ba46f04 *vignettes/Dynamic-Feeder-Pipeline.pdf
9d32bb21ac4f447d9cc4410affc66568 *vignettes/Figure1.png
c1e45b39e5ecb313ba2d240f7772f62f *vignettes/SimResultsT1_1.pdf
b7d931a8a96b1bc682700a0b1dab1c5e *vignettes/data.pdf
dac08c44ec0f647ba8ad1474518ac6b6 *vignettes/feeder-model.pdf
945d785a23cbdb7e42602e2a1382f54d *vignettes/initial-fit.pdf
1e1a6d056919c0e15ad6157f5aff1c0a *vignettes/initial-model.pdf
ac2e26e6449d4fd78d9ce29c39f02057 *vignettes/integratedModel.pdf
0ce72c90c5698557ae5c2f8365612929 *vignettes/optModel.pdf
3544b77ae3fc22cd1a6c98cc8a2c68d9 *vignettes/post-fit-high.pdf
dccd8f5542903ec08ac3a1f16565320d *vignettes/post-fit-low.pdf
