277bf5bc3754885219cbec0e97c66841 *DESCRIPTION
aff5d3095281b8696bb8f8dbee94bf4e *NAMESPACE
2bf3c8dd2467cd60eb94aef2cc0362f6 *R/CHRONOSrun.R
f4713503047d610a396c69eb40be189a *R/dataImport.R
7a39a53f4509946cefa7ad8271250f64 *R/mRNAconversion.R
1198a66528ec75094e3b694ad1536ae3 *R/miRNAconversion.R
c9593abdd187032523b661eec06a8b0c *R/miRNAdownload.R
6241504dad6fa312507b19dca645c28c *R/pathwayAnalysis.R
48b85ac304b273b1d7a50005ffde99f8 *R/pathwayDownload.R
e4025857b97dab03203078fe93f141e0 *R/pathwayMeasures.R
6ac9f27622f2f2dcbe25a32f91b17ed9 *R/pathwayToGraph.R
3cc23f2df82a08bd1dc05b7121590c9f *R/subExtractionLinear.R
ed41ea024a4c9847b94e0356f24db56a *R/subExtractionNonLinear.R
ea4d97a0e95ea24c20e92a4d0918790c *R/subRefinement.R
f31eb8c7f8128a4bf5e813e7d0416722 *R/subScores.R
b939a8c5f9bc2e777365b97c55f0bb22 *R/subStatistics.R
8393299025077fed3b5a17773aded62d *R/subVisualization.R
d167a699dde59b5863b0f7d0362b4cd8 *R/utilities.R
db378359981141337901d3e064a541e9 *R/zzz.R
8aa5f1ed4c8fef153ae5c1cdc8bae0d6 *build/vignette.rds
82c00b01afab8cc7247470e55d2775e7 *inst/CITATION
f55bc772a3596331996c850bbe72aec9 *inst/NEWS
1d3fd07295be5766145b92ffbd4891ef *inst/doc/CHRONOS.R
7cbdd0127ad5f77a0ee7c6ee3b48063a *inst/doc/CHRONOS.Rmd
1750d99a71422b086b09149c642797b8 *inst/doc/CHRONOS.pdf
8d1c8068f1e84c53b28cbe095f4801f5 *inst/extdata/Downloads/KEGG/hsa/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *inst/extdata/Downloads/KEGG/hsa/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *inst/extdata/Downloads/KEGG/hsa/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *inst/extdata/Downloads/KEGG/hsa/hsa05031.xml
5c86930303076b56fffb2124659ee722 *inst/extdata/Downloads/mirbase/miRNAmaps_cel.RData
a0cb7ea78b15e55988d9ac247456bcbe *inst/extdata/Downloads/mirbase/miRNAmaps_cfa.RData
20656607818c5a6e0f0999336c998947 *inst/extdata/Downloads/mirbase/miRNAmaps_dme.RData
6ac71ed83a95d7c3be06257ba71cfe4c *inst/extdata/Downloads/mirbase/miRNAmaps_dre.RData
d801f193d9043e618fc4db0cd5a12bab *inst/extdata/Downloads/mirbase/miRNAmaps_gga.RData
848308837e8a4b8c8c9dda5b2b3b0338 *inst/extdata/Downloads/mirbase/miRNAmaps_hsa.RData
f26276ab1d447631f168ed71619f0300 *inst/extdata/Downloads/mirbase/miRNAmaps_mmu.RData
d886c18f5539936ff080e8a078f91513 *inst/extdata/Downloads/mirbase/miRNAmaps_oar.RData
61f80721ee625b915c5e278e32f1878d *inst/extdata/Downloads/mirbase/miRNAmaps_rno.RData
ba0338a0619071b90c76159b19b7dda0 *inst/extdata/Examples/data.RData
8d1c8068f1e84c53b28cbe095f4801f5 *inst/extdata/Examples/kgml/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *inst/extdata/Examples/kgml/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *inst/extdata/Examples/kgml/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *inst/extdata/Examples/kgml/hsa05031.xml
80be6b7034da70420088ae883e122025 *inst/extdata/User/TarBase.xlsx
b73847dc20f74e19d50f266e54a900a9 *inst/extdata/User/interestingGenes.txt
f5bd80c56bd4310f22a950f561b4db72 *inst/extdata/User/mRNAexpressions.txt
6209f09eb733f87ac17256483bfcef3a *inst/extdata/User/miRNAexpressions.txt
6da5e89fa7bb7b55bef94a3f3fbeb067 *inst/extdata/User/miRecords.xlsx
5b871fbb3592af29b328450307e42a72 *inst/java/CHRONOS.jar
f26364f968916f546b7b86cf122f27c3 *inst/unitTests/test_CHRONOSrun.R
4f7aefd3040ac2c26db999d47096f53d *inst/unitTests/test_pathwayToGraph.R
3d1e948699f5b4b9d0c25fa99afce3c6 *inst/unitTests/test_subExtractionLinear.R
b5a2804bef03d6cca7315e983cd6852d *inst/unitTests/test_subExtractionNonLinear.R
8c9ceaeb0876827e50e9468aadb3f67b *inst/unitTests/test_subRefinement.R
3100a07ec828065bfc818a701ef293e3 *inst/unitTests/test_subVisualization.R
e894a6f5c5310a7de0cc9dcaeccb04c7 *java/FileIO.java
97a458cfbd5d02883560c3807af954cb *java/Graph.java
85941154a61c59e862202aafb01b2a3c *java/LinearPaths.java
0423bda736c964a4ee98e21242929091 *man/CHRONOSrun.Rd
b7cfb90ca64e5a6b162478d90fef7068 *man/convertMiRNANomenclature.Rd
4e8a5cde5dfb5bf647bcae781a85dcbf *man/convertNomenclature.Rd
0393fb73ea380fba0cde1fe05e7a7bb3 *man/createPathwayGraphs.Rd
dc74e7fe99ce68fc04ab09c039e85ece *man/downloadKEGGPathwayList.Rd
7dd2e9572d5ed08491f943fdfcf47b51 *man/downloadMiRecords.Rd
4407828479b19d1ecc7ce9af1668ae3c *man/downloadPathways.Rd
c35708b9a49f53c51f431e5f6cf3a605 *man/extractLinearSubpathways.Rd
9235e41fd492cb76897373bf89c6c531 *man/extractNonLinearSubpathways.Rd
8cdbf6e4bd0f960f7a19123644a4a6d6 *man/getEdgeTypes.Rd
490c1a5bc7935883cdc7bdfa98b78172 *man/importExpressions.Rd
ca7bcd7ca9a29dbbf51581f78deef551 *man/pathwayMeasures.Rd
5497117114466915c751bbcab949abd0 *man/scoreSubpathways.Rd
72e5b082cf13e187c765e56a14da4acd *man/subpathwayKEGGmap.Rd
b28089be2623e585d05ac05f4fc5d765 *man/subpathwayMiRNAs.Rd
62e2e52dd8b0bff117bcb7ea1fe4e8f5 *man/visualizeResults.Rd
44508220d13a7bf56a9d287e418766cf *tests/runTests.R
7cbdd0127ad5f77a0ee7c6ee3b48063a *vignettes/CHRONOS.Rmd
6539ee803b102f112e9b62c2e58bd144 *vignettes/figures/results.png
