af959c11ea2262eccfb2a3c5f8b4800c *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
5d22178aec264bd8cd2360de5d388c06 *NAMESPACE
b7aafac4e9c9565932561811cf08c617 *NEWS
efe99bcd2b388375df53d239f8ffbcf2 *R/AllClasses.R
97b6cdb2868d1e3b7b206deaf599bd55 *R/AllMethods.R
fc6a541f2042d80fab4322af49a3df04 *R/GmtList-funcs.R
d36bf0bc93d7460397e354a0b26ea28d *R/appendGmtList.R
f3121044c1639b030421a75c4231c6fe *R/as.GmtList.R
b4d49576c060c3fd82efff51695e9f14 *R/entropy.R
b1512061d7d51be11d399cc07a2268db *R/gini.R
2964307530bc49d12e77915a13d6d755 *R/leadingEdge.R
618048f963029f01f306bd158e3dc3e9 *R/matchGenes.R
080345e05c632e84abcaf8895b208e73 *R/prettySigNames.R
52ffededd5aa65d4aa4618546d854b57 *R/readCurrentSignatures.R
93ed609589f8f90e6a0e8ab72453c5b6 *R/readGmt.R
87594be1b86c7524a3f249d36e10feac *R/readSignedGmt.R
a66c0c5afc0393b36bdfdeccdbe75dcf *R/uniqGenesetsByNamespace.R
26f4c2e01f055714de4c8f4d03ef8cbd *R/utils.R
6baada10dc6bca22c4ac03edd894967a *R/wmwTest.R
c8af9e531e1e1ee9cb405f64415a7ba4 *README.md
d2419f0f086111692626b12e3c3c9d7b *build/vignette.rds
3818c328153fe770d4c9da45638df234 *inst/CITATION
90178774d7d29fca782b78682d1d0ed4 *inst/Rscript/bioqc.Rscript
26be2edb827f7cba02bbd4886592f3e2 *inst/doc/BioQC.R
f459596bbfc284255abd7f9d44927a58 *inst/doc/BioQC.Rmd
715fa4a174ba2c2c318ea5e55438681b *inst/doc/BioQC.html
de1ba82687f769cf6b144c3705a60d1d *inst/doc/bioqc-efficiency.R
c43f1cd612b0c88ef98f4b0f545126bb *inst/doc/bioqc-efficiency.Rmd
86a01c5f25d356c2a5c650a56c218ef9 *inst/doc/bioqc-efficiency.html
8033377abf704966c56ddb2d4a5cf680 *inst/doc/bioqc-introduction.R
8d26ccc762c453b8cba94ab8209bf590 *inst/doc/bioqc-introduction.Rmd
ad5ac84dc6d6cb2735a8117c7f2fb31a *inst/doc/bioqc-introduction.html
4808437711264ce274b3b9ff01442477 *inst/doc/bioqc-signedGenesets.R
41b14e9e2b5cd5a50f0c7019935f93fe *inst/doc/bioqc-signedGenesets.Rmd
dc8d0716a87b106dd7c4df3aa4093b39 *inst/doc/bioqc-signedGenesets.html
2ebe05892437f69134fbde9dc338c569 *inst/doc/bioqc-simulation.R
eb36e2d6c3a9a2df98a7a266ea7d779b *inst/doc/bioqc-simulation.Rmd
643339f12b5878201f4d1fe9b1780764 *inst/doc/bioqc-simulation.html
49b00a2c20e52091afd8b8934fb27677 *inst/doc/bioqc-wmw-test-performance.R
8c4940fde81072100d35ece075fcb9ff *inst/doc/bioqc-wmw-test-performance.Rmd
3049c06f4ed736d0884c238cf66762f5 *inst/doc/bioqc-wmw-test-performance.html
e84675adec8dfd7b9173891d77b32d83 *inst/extdata/GSE20113.rda
7d5ad7b6195197cf91e28fc8098b0973 *inst/extdata/exp.tissuemark.affy.roche.symbols.gmt
720c563e0cfb9662a05eb01a198a40b7 *inst/extdata/exp.tissuemark.bioqc.roche.symbols.gmt
677a2ffbf5f064c41e52c4e9278f37fb *inst/extdata/kidney_example.rda
9067539e222772d48609f1901162415b *inst/extdata/test.gct
1b839cfddff7cc40f306bab897ec276f *inst/extdata/test.gmt
f16df363185ec24b27e8af2eaa85c405 *man/BaseIndexList-class.Rd
a48182e7f328a1b518d9f390163a5540 *man/GmtList-class.Rd
ce613270f3c74390ff878cb31e33d00a *man/GmtList.Rd
ff2153d6f044ae23f68b3bc13034d9b3 *man/IndexList-class.Rd
82b379dc3aa6812f72599f05c94e7a64 *man/IndexList.Rd
4ef2f6275092dbee37099ae129fbcfd3 *man/SignedGenesets-class.Rd
90cea2ca7e90086d7d82088cb7d496f1 *man/SignedGenesets.Rd
1c477cc95e2fa7ad24fb4f31893be8d0 *man/SignedIndexList-class.Rd
b2c09c3cabbaf0d355518f7fffb9cb6b *man/SignedIndexList.Rd
74759a3c220e1b5cd4109ebdf335f7c6 *man/absLog10p.Rd
a125fe2fea73792eb206a1784dc598e1 *man/appendGmtList.Rd
2890ced63ce9779dea53fc6a11d93ad2 *man/as.GmtList.Rd
4b6b92479f52462bb097359337911494 *man/entropy.Rd
0a0974fe733c752c1050618fc07a1a9c *man/entropyDiversity.Rd
6bd1242ae72b6ac7ea62c045ab07ea91 *man/entropySpecificity.Rd
f0b66dec15bbb1cbd1ce4a965090eaee *man/figures/kidney_heatmap.png
5573c4108cefe85b659818e32b49ea2f *man/filterBySize.Rd
73aa099b084aae05c85c95fcd7e33622 *man/filterPmat.Rd
4727b3cc95659d16452111de2c121a82 *man/getLeadingEdgeIndexFromVector.Rd
7aea2718d08c2b4b8f8372124d76d05f *man/gini.Rd
627b54a85ee80e8bb4172b977eb43369 *man/gmtlist2signedGenesets.Rd
d6984c6218d694dfcd73d79e4f56ce12 *man/gsDesc.Rd
bb841fa7914b2925383977f06a372263 *man/gsGeneCount.Rd
394830afadbdc6fe8bbeebee7d23c45c *man/gsGenes.Rd
28cfb2610b55b67992dfe870bd175822 *man/gsName.Rd
e85aa4ec61a79b6faba24da8ed17e04b *man/gsNamespace.Rd
d1496d38c221c71a067612fa89dc2bf2 *man/hasNamespace.Rd
09cd9a168d97c8df323ae03f30ff9d23 *man/isValidBaseIndexList.Rd
43ea5908dd3e1f680cbf60fa3b7e8e7d *man/isValidGmtList.Rd
0126ba64b60321bd53c367a7537999a5 *man/isValidIndexList.Rd
b775d5c030cdd2277c97eb3efdf7af61 *man/isValidSignedGenesets.Rd
ec29334e25a45065b58ae459ca2aeba1 *man/isValidSignedIndexList.Rd
509adec512dae7a50405bb1e676933c8 *man/matchGenes.Rd
1dfdbf13519cf38c97ab3c211b47afb2 *man/offset-set.Rd
c0a8a31bb1c088871fff5524ba7abfb7 *man/offset.Rd
93acc8a5c8b3520b83fb8486ed3cfea8 *man/prettySigNames.Rd
1185b9c56f096d851467b7e87e159b55 *man/readCurrentSignatures.Rd
7f76338febcfcccdd4d35b83195ff1f1 *man/readGmt.Rd
f4c695e309a0ec24416c89013c4cbb87 *man/readSignedGmt.Rd
261515675f41cc4d691817238ed7d30a *man/sampleSpecialization.Rd
38d1b1179b7fe5e56dc05d4fe2fb2507 *man/setDescAsNamespace.Rd
4111210498c5cfaeb022d08733ca44b5 *man/setGsNamespace.Rd
ee21f7c3549d2c618e639d37631e9da4 *man/setNamespace.Rd
8fd031af0f7c67c562b9e8503cf1a255 *man/show-GmtList-method.Rd
620c471f0f42cbb7db7e93031e2f00ce *man/show-IndexList-method.Rd
c0fa9db05345455c459eadb0e3f26d55 *man/show-SignedGenesets-method.Rd
14ee249285d8a7e060e6e33da9be5198 *man/show-SignedIndexList-method.Rd
801152b28dc54a3479de71373eadb9a0 *man/simplifyMatrix.Rd
b1d388768a7a428d7ae5d2794d2e3ed3 *man/sub-.GmtList.Rd
7f1a1ef52faaa20cf5015cb6ea3d0357 *man/sub-sub-.GmtList.Rd
e73f6cc916b127c33dddc794857af8df *man/uniqGenesetsByNamespace.Rd
0d145c92dd50d21bec5151d76025a648 *man/valTypes.Rd
0ea3752fccd58c784295b4242a1c3cda *man/wmwLeadingEdge.Rd
d797878cee6f4a673c626c0e4a982aa3 *man/wmwTest.Rd
5a6b299cb250552ee91246de482b2f9f *man/wmwTestInR.Rd
7bda392a6a65062d868ca89355c5f0f9 *src/Makevars
6e6d1fac9cc12acff1ed16b915f2a6dd *src/gini.c
074311a7f33e27ceeecf170bdc11b04b *src/init.c
3d4e53ca57599103aa4abe47ab8d471b *src/init.h
da7f49bd35aab8ce63fcf0a7f4266517 *src/read_gmt.cpp
f4f0df7455fae6d09cfaeafcc7531f88 *src/read_gmt.h
a245fb0603eab8237e6083b5e454388f *src/stat_rank.c
af938468913def75af3157061cf2113f *src/stat_rank.h
b5b92c9d6d6f05040ed6abc9ccf903eb *src/wmw_test.c
b3721539ad29a627fbf4311ffbbfdab8 *tests/testthat.R
5dfce7a1070dacb3fb33ced0808f8146 *tests/testthat/test-gini.R
daa7b5b09d61336eff080e66af552f67 *tests/testthat/test-indexlist.R
744bf52918c002f3a72f48a0a9a99f08 *tests/testthat/test-matchGene.R
3a06b3a5823d6228c1548fc911ae946e *tests/testthat/test-normalzed.R
820466a00732239b55b18518bc7e6a2d *tests/testthat/test-out-of-range.R
c29f4cfe335297e808130513fb142591 *tests/testthat/test-readgmt.R
c976410df56c876e8f4625bb3b7192d1 *tests/testthat/test-u1u2.R
0d591166418dca5b228d0e8b6c5c7d02 *tests/testthat/test-wmwTest.R
f459596bbfc284255abd7f9d44927a58 *vignettes/BioQC.Rmd
c43f1cd612b0c88ef98f4b0f545126bb *vignettes/bioqc-efficiency.Rmd
8d26ccc762c453b8cba94ab8209bf590 *vignettes/bioqc-introduction.Rmd
41b14e9e2b5cd5a50f0c7019935f93fe *vignettes/bioqc-signedGenesets.Rmd
eb36e2d6c3a9a2df98a7a266ea7d779b *vignettes/bioqc-simulation.Rmd
8c4940fde81072100d35ece075fcb9ff *vignettes/bioqc-wmw-test-performance.Rmd
6e9a1b2a224a54883b890a5ba1d6c755 *vignettes/simulation-benchmark.RData
b0fe3937152d09bf5f20c0150ca4be80 *vignettes/wmw-speedup.png
0bac049a90875246200b08615d49549a *vignettes/wmw-speedup.svg
