96189bc3099320f1ea18db0fb8899833 *DESCRIPTION
fbea3363f76dc674161eb57b0ff3a769 *NAMESPACE
143c62bcf66445ffea046aba8ad616b4 *R/Graph.R
9bdf494ef90c235e40a4ffd3d636c0ed *R/HeinzUtils.R
76ccc00f255ab05e42ed0cecdeb61e41 *R/IO.R
651934efbd40f03334cd2191914ad2e7 *R/MAUtils.R
bfa319768d593476e4988eca59ded271 *R/Plots.R
d3226e21e37e2efc4b2bbc8a4a88976e *R/Resampling.R
9d8d461649c3de5f34988e964df41971 *R/Statistics.R
94138d1194473b9d81d4c793c5ada4f6 *R/zzz.R
0e69bda1215499625f5508b6072c5360 *build/vignette.rds
322789e2c1cec6f86a63c669ad14eeff *data/pvaluesExample.rda
7078829969222433818285a2431c7e0e *inst/CITATION
652574464cd9aa3dcb5682b3572fa6b4 *inst/doc/Tutorial.R
593ced3abbacfd90e53e9804918e11ef *inst/doc/Tutorial.Rnw
36f5df5a3735da16a47369434264ad03 *inst/doc/Tutorial.pdf
fccf94a95206cf0ed1c53ef559eb7597 *inst/extdata/ALL_cons_n.txt.0.hnz
f3599585be36ef3e17791b8842df3d8c *inst/extdata/ALL_edges_001.txt.0.hnz
6173d726911c36c21f5c75a559bad75e *inst/extdata/ALL_n_resample.txt.0.hnz
90f2e411661ccd4f056d5cac637e722f *inst/extdata/ALL_nodes_001.txt.0.hnz
173265b14772fc45c2b7d879f6223411 *inst/extdata/cytoscape.sif
1796335dedf8a59e1a9e5c6c23ef1795 *inst/extdata/lymphoma_edges_001.txt.0.hnz
84477a8e09443478005f43c7d6b0432f *inst/extdata/lymphoma_nodes_001.txt.0.hnz
8bcd2ecf121a6fa9bb770f5a6f44c26b *inst/extdata/n.weight.NA
3177625323ef6d38384d8078951678ab *inst/extdata/weight.EA
4626d0774179590a36526d5342c1e2d1 *man/BioNet-package.Rd
6c47630ba450e97980da7974e4001908 *man/aggrPvals.Rd
75c2acad3bbccc4ecc068dfca4c9cfca *man/bumOptim.Rd
2c4e5988bebaa551be0b7c00e071a729 *man/compareNetworks.Rd
4bacc2a8c1196bbc9179e81f864c1f40 *man/consensusScores.Rd
dfc3669bb33e52dc68daa1f7c93451bf *man/fbum.Rd
e59ee66772cacf7ba375180f4bbb4e1e *man/fbumLL.Rd
c47df4976ca0be2125be23e2f069a7a9 *man/fdrThreshold.Rd
e4e3eda2a6abdd6f94ac293fb2b91230 *man/fitBumModel.Rd
c1e447eb0a6576a1921488a1bc89e64c *man/getCompScores.Rd
e70b02afa8f87b7c0b9dc7e9c81820e2 *man/getEdgeList.Rd
33c8b6ef495e4ec9c510e8e6cd9be5db *man/hist.bum.Rd
9df17bb12531847537a5f2d9a48ad9cd *man/largestComp.Rd
3c1d2914923d131c537b0e1a14f91113 *man/largestScoreComp.Rd
41115617b4c7fba02298b22a9793748e *man/loadNetwork.sif.Rd
354b830cb87e9a68e688dabca3b9e33b *man/loadNetwork.tab.Rd
dbf3c20a6966dd02795760cade6d6515 *man/makeNetwork.Rd
53cfd015c215c88bb8bfb117e0b2e191 *man/mapByVar.Rd
a7f78d507d7b9c42307686f40ad497b6 *man/permutateNodes.Rd
26a6551e5e0c471f9453bc3142ead879 *man/piUpper.Rd
c0aa792c832708dd65c7b86dfed5aa99 *man/plot.bum.Rd
a6c9344976e3920c522592a7202c9fcd *man/plot3dModule.Rd
3a4aedaf17fa86dafb64e2d6fe17c3c5 *man/plotLLSurface.Rd
ad51a1db133d8e85acfd8a82cc3f2554 *man/plotModule.Rd
375415309f6429c841d16c19ca7f34b6 *man/print.bum.Rd
52d084f1471c14d43193c0bc2cf2c8ad *man/pvaluesExample.Rd
6fa75dc9773275be8dfd3ea5007283c5 *man/readHeinzGraph.Rd
91cd262ad0add263e8da760bd45d20e7 *man/readHeinzTree.Rd
bac725000781c16bcede365fd0b04ca0 *man/resamplingPvalues.Rd
e8f6c668d47fa618c4b414d116f1e18d *man/rmSelfLoops.Rd
7fb50fefc7684adb1ff94c05108d5503 *man/runFastHeinz.Rd
87239e943c97d3bb0c4fb16acbfd6e0a *man/runHeinz.Rd
3eba3e17ee3e09444d81c73e0b58f292 *man/save3dModule.Rd
703ed1ba09d7ebed8de5e5e2bb377572 *man/saveNetwork.Rd
9fa27de5f35435b1e7c5818ef7f718e6 *man/scanFDR.Rd
7af2d954eb16593672e36c4ea7e67101 *man/scoreFunction.Rd
caf76d49033880526a01fd76443ef3a9 *man/scoreNodes.Rd
bf2f47666b929fd271f19c16aedd39f7 *man/scoreOffset.Rd
88fed32615a1ea6051c77b71e514884f *man/sortedEdgeList.Rd
5ca22e08a6462b840d25cd4267b2d6c8 *man/subNetwork.Rd
58fdd3a05c98907861f942d805d8278a *man/summary.bum.Rd
55f099264412b012c9ddd12b3e70ab6b *man/writeHeinz.Rd
db6475e82ce979440568d23f22e3a9bf *man/writeHeinzEdges.Rd
4e06fdec5b141ab91cefc41701e75466 *man/writeHeinzNodes.Rd
c18755bd271ce8e97c26cb12a13c66f2 *vignettes/Tutorial-3dplot.pdf
593ced3abbacfd90e53e9804918e11ef *vignettes/Tutorial.Rnw
855c69c0ba514ab29e5bf3c934f9b1f4 *vignettes/Tutorials.bib
43655527f9ab15a1dbebcecc5f004b33 *vignettes/bum1.pdf
9a5c6e61891cd3498b5a502bfe5b5a00 *vignettes/bum2.pdf
7d995b9005f8f81fdd4a2a895ab7a337 *vignettes/cytoscape.pdf
21be79f9f37aa4600a9df7ac1c967816 *vignettes/prec_recall_large.pdf
eb85a2a7fe899528c1d871159d2236b6 *vignettes/prec_recall_small.pdf
