1679a15f6dc55b666854509fe5a6cc65 *DESCRIPTION
519b95470c6e7776463ce571b742e227 *NAMESPACE
080e7bafa8bce8417acb8aa96f1dc050 *R/AllClasses.R
101a7b3e2cd4d1f5fd6372df09086161 *R/AllGenerics.R
86f5891527166abf8ca590cc43c4a942 *R/annotateGRanges.R
047a9b8f40192d42d00197fe8b6e698a *R/betaRegression.R
cae01addd18001997ae828558360b6fe *R/binomLikelihoodSmooth.R
ed2de54cf880b263f7ab7e30dde5aafa *R/categorialColors.R
1e8a60a072a9aef43c5a96feb186c034 *R/clusterSites.R
92c1411ab9e813de224d2b6663837230 *R/clusterSitesToGR.R
fc27c84851052c0c27dd6fe735999d69 *R/compareTwoSamples.R
c01c1917360c2a46eea0c3f108faf5ca *R/covBoxplots.R
f2c9d41309d4aa4ebb39b02555418235 *R/covStatistics.R
463ed10e9829f71a087704d221688d7b *R/estLocCor.R
0eedca6884a5f43c62343c2311933db3 *R/filterByCov.R
c2a78da84b17e7aaef3f7bbd1f4fcbdb *R/filterBySharedRegions.R
77cc5017708e27ecbfe3a506fb26747b *R/findDMRs.R
b484aec8ba92c922999ad394ce65a7f0 *R/globalTest.R
cd9218c7787f640354b60a3a370f1847 *R/limitCov.R
60a62718a4004ef202a93a67a7d5f666 *R/logisticRegression.R
6c07a93aedac5194072a0b039a49d427 *R/makeVariogram.R
bd38df38b62b3a6935929a42b581c60c *R/methods-BSraw.R
afc4eb08c1080ed8d7cea717c213694f *R/methods-BSrel.R
9f5ad2d6927d11eec2f57536a9229238 *R/plotBindingSites.R
edb5942c0717d229547d72a70f2fb75b *R/plotMeth.R
a734915284c53afa3b4d0c5aad7dbd73 *R/plotMethMap.R
1dca0e611411bcf639fcc56688e759a1 *R/plotSmoothMeth.R
7f97d7d6d25d863036d94e6a646ac40d *R/predictMeth.R
7e30cae0f792bf1beb99a521e250b92c *R/rawToRel.R
9bcbec042ddedf76503842873af44a7a *R/readBismark.R
a4849e9cd9488bd355dc5ec6d35c706c *R/smoothVariogram.R
f422a2cc68609da886f2aa907f67e0fa *R/summarizeRegions.R
46563c51b2c623f6e7e8fac71bfb4f71 *R/testClusters.R
0d574e12c054fb4b74a63d3d7c5aeafe *R/trimClusters.R
ff9afdd7d64030cc0c4d421944e9ea9d *R/variogram.R
349a17d1bbec28e522df98caa55733b0 *R/writeBED.R
6ed5391e47a9f71bbf62234238e2ea83 *build/vignette.rds
5cca93b533dc3512117d8a7a05f6e9e6 *data/DMRs.RData
d39d4ba0e3679b2208fd9f0904a0c8fe *data/betaResults.RData
2dffabb530fcb0aec90faf6c70a04e0f *data/betaResultsNull.RData
383ec67090ceb9cdb58f95913453bab7 *data/datalist
aaaf0a3259d0f3564101cb4f70be79f8 *data/predictedMeth.RData
854ebe3970330c0fb531340fd69b8a18 *data/promoters.RData
7c3036a083d552c3e85ff3a98eb4f996 *data/rrbs.RData
f2539fee6acbcb296860d28703f08856 *data/vario.RData
c9e3efe12b531502e3f363f9d95ec09a *inst/doc/BiSeq.R
93939252b5ef4a9b05f9d862de0b2cce *inst/doc/BiSeq.Rnw
95641575356f19bd6f48e9170a5d8d11 *inst/doc/BiSeq.pdf
3584bec21bb5218c7acc5cebe18deb34 *inst/extdata/CpG_context_test_sample.cov
1de4df9f0e6548088d053592a4fd59b0 *man/BSraw-class.Rd
cd5de169fc318c6b5e26a58bfd718aeb *man/BSrel-class.Rd
208f2aa2bf37e8c6eb65db9de615c3d3 *man/DMRs.Rd
112891d02c326f4865202c9e9653d47b *man/annotateGRanges.Rd
d5c87dbcc8f61ec35b48fe9d737a8805 *man/betaRegression.Rd
028ca3c071ff73bc2cb0465236432f4a *man/betaResults.Rd
a3e4027ac0c4a26016aba02de8883242 *man/betaResultsNull.Rd
f849c329dd1905e8a4215c4e130aeaf3 *man/binomLikelihoodSmooth.Rd
36daef1699c9b508934562698cccac53 *man/clusterSites.Rd
4da0ba5afd854b77c3bf7fede79d06de *man/clusterSitesToGR.Rd
90808493575f80a2205fb9b570735a5f *man/compareTwoSamples.Rd
4308e71901e2eee579c4f405c9b2eccc *man/covBoxplots.Rd
d89dbe8860112d6deeac9d443260deca *man/covStatistics.Rd
528e1613125af5c94811776e01911c11 *man/estLocCor.Rd
835a5b8217b0d45aab785bb077d3ff42 *man/filterByCov.Rd
75e5a2a56feab27fac5d618f565b8ba9 *man/filterBySharedRegions.Rd
d81afa1a3e67f0551bddd21aaba0a626 *man/findDMRs.Rd
08b57e8539a99f1a9b2112f13ea7ca1a *man/globalTest.Rd
7ca13f242a59d292e91f0d1902224dc7 *man/limitCov.Rd
91bdad3451db4b29a1677db4ceb1bd5a *man/logisticRegression.Rd
372ca406b674f5e334f497b78172441b *man/makeVariogram.Rd
6b93422a77785a0f6754cdb92eeec87e *man/plotBindingSites.Rd
002575bba6452b8c760b63f0d2c431c7 *man/plotMeth.Rd
8eabcefa546bbb3ed8434750f6d0be09 *man/plotMethMap.Rd
7c801a3529bd67e3d4d3484241adcd80 *man/plotSmoothMeth.Rd
32caa538e9a67955dfec1318ba35f691 *man/predictMeth.Rd
b872fb6f4d53a56bea024531d5a43bf7 *man/predictedMeth.Rd
2e4adb7d0459afcf20adce5d61df5792 *man/promoters.Rd
0b24023856b426b9f5aef10e015dba4b *man/rawToRel.Rd
b66c4c3943068afd27a2476e24b6de05 *man/readBismark.Rd
2f346a9201240bdcf48bcbfec8ae08ac *man/rrbs.Rd
8968f596410a8444c2461a1ef9e88237 *man/smoothVariogram.Rd
d0769183619f0e1d187e84cf0e5eb6ad *man/summarizeRegions.Rd
964c8974a462d9480284ad6f204c33d5 *man/testClusters.Rd
c58c8729c2247d0c15e3d3536df6ecca *man/trimClusters.Rd
6aef37c6539ffe797ea4f52baa70a9fd *man/vario.Rd
b686c9390515a2a9617718acb716402e *man/writeBED.Rd
93939252b5ef4a9b05f9d862de0b2cce *vignettes/BiSeq.Rnw
8bd99f4b68f13865ecf4e0878ced5586 *vignettes/BiSeq.bib
865de1b5677f46ddf58f8ed9f3bf2d85 *vignettes/igv_snapshot.png
a7b9fe806ba7e04af604d3f888c56ade *vignettes/igv_snapshot_smoothed.png
8a5ad410844b8f334847b40353467211 *vignettes/unsrturl.bst
