46fb1cd94492e7de64fe325bd8dcd952 *DESCRIPTION
ae59b8a6e95d660b2b63a851c68911a9 *NAMESPACE
a29faff141a66b5282fc13567db77dc4 *R/AllClasses.r
92775c7cc477ff258373f1a2b0b5c7e2 *R/AllGenerics.r
d593c65f1ea17811754aabdb4d4ab932 *R/checkRestrictionEnzymeSequence.r
7f67b37390a18aa442ebf1719df1d7b7 *R/chooseNearCisFragments.r
43126874a0d30e2b5266b5f4b0a81a2b *R/createVirtualFragmentLibrary.r
c23672f06211e35fbd5cc77e3fe8fccc *R/drawHeatmap.r
2dbeef4166b1e1db6d974f9cffd331db *R/formatFragmentData.r
59704c5ac5584e7abeb6677b86d8e3f6 *R/getReadDistribution.r
33789eeef7d51df5e6ee16707e9187f3 *R/giveEnzymeSequence.r
274f4e9bd2be55c13d2d15c0dd5f813d *R/methods-Data4Cseq.r
9cb211378edc93d7eabef765eb8444a0 *R/normalizeFragmentData.r
12a8c0ccb35c9ba2a83d4f3d7351ac19 *R/plotTransInteractions.r
21fd23898e416f2469754514dee8b0de *R/prepare4CseqData.r
3cada3316dede51ebace0df94b7ee1bd *R/printBEDFragmentLibrary.r
0612013c826f49020ce45e893cc0feec *R/printWigFile.r
31ca7c244dddf4aee0bf2d08cdb53182 *R/readPointsOfInterestFile.r
12feb50fed1e8c3edcd488ba71cd4cd4 *R/readsToFragments.r
6823b82460010ac203e91b3f189c4b6a *R/simulateDigestion.r
6c1be6d587b61a50f7e65203fd74f182 *R/visualizeViewpoint.r
0c8dd4f49eef4bcf9e1a682f73f7a422 *build/vignette.rds
19f115ff0b884f8cc82e949fe92c9e4a *data/liverData.RData
9aa3451d7442ad274145f7b7492ba8d5 *data/liverDataRaw.RData
1c1f7570c5c88c17a95c57dc4920b832 *inst/doc/vignette.R
67392a702c2453b846903e0c1a42e6c0 *inst/doc/vignette.Rnw
05154f7cbc640bb670491c122bca2fde *inst/doc/vignette.pdf
b90cc5bc0dca1138debae1179cb813f8 *inst/extdata/RCircos_GRCm38_ideogram.csv
6cbaecaf4ed2293298343bfce751c258 *inst/extdata/RCircos_HG19_ideogram.csv
00c1d1d92fa3a07f3403a5c039f899c7 *inst/extdata/enzymeData.csv
6332710cc1a1ee8ef40cb95538a94929 *inst/extdata/fetalLiverCutter.sam
4f671ebe3f1c6dc00177f7d50b8944df *inst/extdata/fetalLiverShort.bam
614b15a01e9f8d0bd62458ec969845c7 *inst/extdata/fetalLiverVP.bed
ab13942a15e17712f182b3b1c1e0363a *inst/extdata/fetalLiver_finalFragments.csv
a3e529247e47214266dd2a252dfb039b *inst/extdata/transInteractionData.txt
d39a2c0c80702059da9c6f99ae18a212 *inst/extdata/veryShortExample.fastq
a80e603e40f7343b0bb97c1380df61c8 *inst/extdata/veryShortLib.csv
e9e6b8add27c84f481a1839f9db793d1 *inst/extdata/veryShortReference.fasta
ac34dfc4f22e37a2a286f31ddf7ecceb *inst/extdata/veryShortReference.fasta.amb
06d4a319a43ef8e7bf7f0090e14e6433 *inst/extdata/veryShortReference.fasta.ann
88c3629f9b4134224e100e04d1fcc251 *inst/extdata/veryShortReference.fasta.bwt
cfc9149681143ca9aff12fe0842e34d1 *inst/extdata/veryShortReference.fasta.pac
3748a2acac76bf91845f10bd7df8dabb *inst/extdata/veryShortReference.fasta.sa
e914f0f7d046dc7494eeb2e2d3348ed2 *inst/extdata/vfl_aagctt_catg_mm9_54_vp.csv
dfa5261b0a6d8fe697feda2f8b633366 *man/Data4Cseq-class.Rd
0d949fec2a8b33c970d761bc5625b3b6 *man/Data4Cseq.Rd
6b75905541421f86545f48171fd32981 *man/checkRestrictionEnzymeSequence.Rd
f23dd3b45687413ac7a47cb23713ff36 *man/chooseNearCisFragments.Rd
901ba92e0920d4d4bdb6a2a7e74fddc5 *man/createVirtualFragmentLibrary.Rd
f4698717d6afc57173420aaaa6106755 *man/drawDigestionFragmentHistogram.Rd
b900fe2fb8fa76d09352b857e1f88442 *man/drawHeatmap.Rd
8cfbd89a510ada1f31fada578806c5fa *man/exportVisualizationFragmentData.Rd
0907dba125687a963d6ec9646fde375c *man/getReadDistribution.Rd
ea8448d665ed122a42f45c6fd7d0238c *man/giveEnzymeSequence.Rd
dead748de00ce54de33c57a42452cd3b *man/importVisualizationFragmentData.Rd
2933d606d0502ffac9ac90a29f9c7a80 *man/liverData.Rd
cbde0c2ce1cf23097f22337b93bb6afa *man/liverDataRaw.Rd
018e9dbfeb1f1f2d147170ec92193898 *man/normalizeFragmentData.Rd
fce915748954361778661444f8f96b8e *man/plotTransInteractions.Rd
055589f1fa8d41e37cc73baa60a143f3 *man/prepare4CseqData.Rd
f758182208d71aef1182b22da2386796 *man/printBEDFragmentLibrary.Rd
5db07af8ecb9bcc9f7da8866fda9e120 *man/printWigFile.Rd
309190932ba991bfa8daf6c50246daec *man/readPointsOfInterestFile.Rd
5cfa41084d5009e5ba79dc54fbbda2c8 *man/readsToFragments.Rd
3ffb069c4012041d5fec97e22c6c36c9 *man/simulateDigestion.Rd
d3a21649e3b8175086d1ef35174ee5a5 *man/visualizeViewpoint.Rd
03d63f4ca472c40c7fde1231ba5255c0 *vignettes/images/drawHeatmap_Output.pdf
84f72d585223856f429f0648a26c90cb *vignettes/images/visualizeViewpoint_Output.pdf
67392a702c2453b846903e0c1a42e6c0 *vignettes/vignette.Rnw
