d8932b1cf137349f5fecac0c26fd3a66 *DESCRIPTION
ef03bbed8aeb3fc056d8b98bead255b7 *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
e8d022bf08ebf9659425ba2d68ceb324 *R/BadRegionFinder.R
79d9cdc8e447b4fa9afdb91553df1e2f *R/additional.R
6cca990796088b5f4097f6f7fe9d2d0a *R/plots.R
ac72bb3bb318313f800b51f9fc97226d *R/reports.R
69d6e0c0f25df9513fdbe4071388a73c *build/partial.rdb
7bc6020c920251c2c523e78847a866a6 *build/vignette.rds
da213c0a472b9a29af8b2b0aa006a73e *inst/doc/BadRegionFinder.R
8f627b7998b2568fb9031f038fe341a4 *inst/doc/BadRegionFinder.Rnw
d9ac8cb13d62176a02975ac2632da5f8 *inst/doc/BadRegionFinder.pdf
57260012704b57257d5e6554a899b473 *inst/extdata/SampleNames.txt
b6dd0d7deabffe903a0cc6d48f8f0128 *inst/extdata/SampleNames2.txt
311ac38889571141dcfc76b7549f686a *inst/extdata/Test2_454.bai
55e48d8f4ad9831a652beffd8852019c *inst/extdata/Test2_454.bam
b11b1fb6c73b5fd36f06601ba89ed130 *inst/extdata/Test2_ion.bai
dfaeb4e7b5bfefd8d92420e9d8f87bd5 *inst/extdata/Test2_ion.bam
1fd740102290e22f9375f392ddc9df28 *inst/extdata/Test_454.bai
72dc73efbaaa4a432bcab90d4e2505a5 *inst/extdata/Test_454.bam
5c3e3802075486ba31f35095078129e4 *inst/extdata/Test_ion.bai
fb7395262ecc389ae2d8747074d1f269 *inst/extdata/Test_ion.bam
72edc63cbd18548ad0441b76804b0bc2 *inst/extdata/regionsOfInterest.bed
3b58e22463ee181a5165b065ff312540 *inst/extdata/targetRegions.bed
482b755ffc5ba91f265360309aab880a *inst/extdata/targetRegions2.bed
a029463faab3b0ce014bdf31ee8b600d *man/BadRegionFinder-package.Rd
3fb0830ba0b5105b098fb9313bec0f02 *man/determineCoverage.Rd
e885ae32641c67ac1ba63a83666ea43e *man/determineCoverageQuality.Rd
e2a6b02f65b5a89a9f6268d52c223c94 *man/determineQuantiles.Rd
15b800073399ef8fb5552f2b8a9dcf8a *man/determineRegionsOfInterest.Rd
283b057e4d09dcc5220ea92fe0c421b0 *man/plotDetailed.Rd
cc523a886dbe938fdab4a75ef1fa66d9 *man/plotSummary.Rd
5882ea9437adca7b9083ee58c72e9017 *man/plotSummaryGenes.Rd
b8de029cf4e3bca33180e3fd5b692c9b *man/reportBadRegionsDetailed.Rd
9faac23019282d25f65d08206ffe7087 *man/reportBadRegionsGenes.Rd
2c8907d43ef01b23d71e563edc4e90a5 *man/reportBadRegionsSummary.Rd
8f627b7998b2568fb9031f038fe341a4 *vignettes/BadRegionFinder.Rnw
3808a78dfd054b7c747023fa8b2e2106 *vignettes/bibpaper.bib
