4267f15affaaeefe2a5b1b2724fe7324 *DESCRIPTION
79e09309f9ac6e723e9b0d0848e8e3d1 *LICENSE
4eb26170b7baa728344d1a5d1f5e4026 *NAMESPACE
2cb4e8912aebd84a28dd0b19dc1e29be *NEWS.md
7ef12bf5f32e75a2d8d42d59597dd6ee *R/RcppExports.R
8b47b67a3ccc0e75d6569a485717aba7 *R/annots_from_fa.R
ce361275211b3fd51e490b943fee01fa *R/biotypes.R
0e1f8f4ef79b59db08635c5537c998c4 *R/get_tx.R
fe616a96cfb99bc88a527c35fe645e72 *R/knee_plot.R
85c7f23f15e357eed65b517ecfaf988f *R/sparse_matrix.R
bac6716ac6a907f3e638b21792134fd5 *R/tr2g.R
7da0863219efa8db5600e64988ae85a7 *R/utils.R
23264a01e3571f4e66ba958198b36be2 *R/velocity.R
72d4373dd89326ea713502c674cfdb7f *R/velocity_methods.R
ba2eff5c7b506b93c03db4503e7115bd *README.md
e885a8b7e27bf9d6ed63905301696ca0 *build/vignette.rds
3642774efe515c70969d04bb4bf177b8 *data/cellranger_biotypes.rda
21a35d71144fdd07a7f551cc2f305e06 *data/ensembl_gene_biotypes.rda
2efd44a74733768e7a66d68d97209af1 *data/ensembl_gff_mcols.rda
dccc3a010544d4df39cc19bdda672307 *data/ensembl_gtf_mcols.rda
0d6cda17160de5832da3fc367cfbc366 *data/ensembl_tx_biotypes.rda
4bc933d61eff0bf2e542e65371fc2475 *data/refseq_gff_mcols.rda
a17b3bb313d4e716a17e37dac737975d *inst/doc/sparse-matrix.R
7583278c8c598d95a35303bf4f61a123 *inst/doc/sparse-matrix.Rmd
1283b9cd657bdb5e956e8419c88eff49 *inst/doc/sparse-matrix.html
f9344767648369d2ba4fd8c2c6780d12 *inst/doc/tr2g.R
3e3c95a94e06a1551f3d14bfb109b098 *inst/doc/tr2g.Rmd
8bb089dd2e61144fceb23293012ecd79 *inst/doc/tr2g.html
8cdd49a3d00a107a20d9d7d4c262081e *inst/testdata/fa_tr2g_dm.csv
f2a00699a5dccf36b6cf2c57cab90266 *inst/testdata/fa_tr2g_expected.csv
e9570ac22e1b1135442a0c547675940a *inst/testdata/fa_tr2g_no_version.csv
3cda752fd01f178fdfb719ce3419a299 *inst/testdata/fasta_dm_test.fasta
cb75d4a86d6c88a89bab04c3ad67fbe2 *inst/testdata/fasta_test.fasta
a14c2c25c35d1dad0d5d2a19f20bc340 *inst/testdata/genes.barcodes.txt
0b04955c05bafb91b663c5026fbad55a *inst/testdata/genes.genes.txt
29bf3649da5ea0feea29b6a0431d8e15 *inst/testdata/genes.mtx
4e8d444db919271da60d87f5036b8f59 *inst/testdata/gff3_test.gff3
e41c1a05342ec643c72edf4f1a9f9fd0 *inst/testdata/gtf_test.gtf
582703001f7c446a07f117e151368253 *inst/testdata/junction_capture.txt
017b074086aa7b7d7dc08f5d55969c50 *inst/testdata/junction_coll.fa
445bc52226991656883a57c7d688e92f *inst/testdata/junction_tr2g.tsv
07e8e3995df1588fe9e4d7e24238155b *inst/testdata/junction_tr2g_coll.tsv
d1181ea9aa958e873bf7d4dec22984f9 *inst/testdata/junctions.fa
ab63ee1730118176a5dd628c662e398a *inst/testdata/matrix.ec
7f7f88a1b751d9548a270911b9dff735 *inst/testdata/output.sorted.txt
3d716b39956e254b09b187641a138b7b *inst/testdata/toy_example.RData
38ed617bcc12035a117bf23cf163ed8e *inst/testdata/tr2g_bustools.tsv
f8914e453ea66a4a00428875e50c6295 *inst/testdata/tr2g_expected.csv
3a36dbd9c75d7c2b288bc6c9f268a909 *inst/testdata/tr2g_expected_version.csv
9a65a78b659e8c40f9b146d00e77446f *inst/testdata/transcripts.txt
f8886216fb9db74efdb5caadd635d039 *inst/testdata/velocity_annot.gtf
2f1df9d6d26ac3c04be722d64bd97605 *inst/testdata/velocity_cdna_tx.txt
d4fa22fb37ac8d451608d8eeb6c0b7ce *inst/testdata/velocity_genome.fa
c7266d5fb37aeeb2bb65c42d0cba10ff *inst/testdata/velocity_introns.fa
a13d971175ead68878ff1ff7adcaa11e *inst/testdata/velocity_introns_capture.txt
fc8c2237a05cef38747052663bceddb1 *inst/testdata/velocity_introns_coll.fa
43e683c86ab632843b4a22abf2f864b9 *inst/testdata/velocity_introns_coll_capture.txt
521be390719a54f3af323cb44e3b923b *inst/testdata/velocity_tr2g.tsv
a596acedee54beddef3a13e949044ec6 *inst/testdata/velocity_tr2g_coll.tsv
ce65f9b0b6c178e8a928333167b437b5 *inst/testdata/velocity_tx.fa
82bd68b7bf537ef08926bf3609e1aa5d *man/EC2gene.Rd
a3f81ff7f4231395abfbd35c1710c801 *man/annot_circular.Rd
bea67f357f2f26abaca9647bf4e9c830 *man/annots_from_fa_df.Rd
0fbb79c55afd25e5296b8c3a7c1a1846 *man/cellranger_biotypes.Rd
08886cd992b7804b2ee7d5cbe99787ea *man/check_char1.Rd
035de48a22c0db9d8d342bab172d4328 *man/check_genome.Rd
ee6fa195f4c8db6a8d6c6b917e9dd24e *man/check_gff.Rd
99a2f20d31b6f5f59de88348d12a044b *man/check_tag_present.Rd
a42f6fcf3d2675811eb8d93c97b72b70 *man/check_tx.Rd
d99922cb36746c07285ca4322e9f50c5 *man/dl_transcriptome.Rd
fb21c58bb6b5195e0fcbb0c9e858cdca *man/dot-get_velocity_files.Rd
f498930395ad9d5b7f5722c8b2bc9518 *man/ensembl_gene_biotypes.Rd
666eebe386c088f8e332db34b1e0fc2c *man/ensembl_gff_mcols.Rd
36b110f249c6e5f9f7fa2e4cd64e9f44 *man/ensembl_gtf_mcols.Rd
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bb0455685cde32a8309009b0d3987f26 *man/get_intron_flanks.Rd
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925460525d83eeac3d19ebf333899624 *man/knee_plot.Rd
8fd914204ba26f11311a1421c8d0c52b *man/make_sparse_matrix.Rd
0850c5922629cd48b5cbea43e813c727 *man/match_style.Rd
df0c12e1b68ba261f782a884c7637fb3 *man/read_count_output.Rd
a018b771436f5867fe03c3ccb22ff7d2 *man/read_velocity_output.Rd
dcaae1d3146dd8415a342d70f70dd06e *man/refseq_gff_mcols.Rd
da8e8abf26ee712001625178adb577bc *man/save_tr2g_bustools.Rd
1882f3e3c86ba1c2a9b3d86983cd187b *man/sort_tr2g.Rd
f6bfd60510911ac505f35ac4d128b76c *man/species2dataset.Rd
9364100ae8c01560b5401af27e874e4b *man/standardize_tags.Rd
21198a53497001f9e412fe1f0eca3661 *man/sub_annot.Rd
4b199218158f27a53e6dbeddf59107ec *man/subset_annot.Rd
18b159966dd477962cc64ca1e3e26e83 *man/tr2g_EnsDb.Rd
bbff3639af53b791ae4c48807aa999f3 *man/tr2g_GRanges.Rd
ed037eddbb7b7af9eb417b0fa6048766 *man/tr2g_TxDb.Rd
afc414e9a84f0b91e688398bdadb234f *man/tr2g_ensembl.Rd
4a4f65a98a3fa1c044b3a1e783960e5c *man/tr2g_fasta.Rd
5d56ef0af1825f4c4ea8de04113396e9 *man/tr2g_gff3.Rd
8b8421849965e5cdcb31caac02a9ccf3 *man/tr2g_gtf.Rd
22c43c24bb3b0ab7353ee05de6e4dc2c *man/tr2g_junction.Rd
b87aa1aa34615860c91e4e1a93a99d46 *man/transcript2gene.Rd
ee9036429741586bb071c17607ce77d3 *man/validate_velocity_input.Rd
47066cfd25e5979c8d2ea2b75ea51599 *man/write_velocity_output.Rd
73a02caced326aeacced0c2a1e6350f4 *src/Makevars
73a02caced326aeacced0c2a1e6350f4 *src/Makevars.win
e1e10f1d750441bd2ddc11372d35dc6c *src/RcppExports.cpp
37783ed68241b0bb33864bd5ce7f00bd *src/fill_cell_gene.cpp
f3e09230a2751afd22cd8bb540420aa8 *tests/testthat.R
ab25fb0aa88a8e034acad68f60371b94 *tests/testthat/test_sparse_matrix.R
a5557bce2e85fedc42c4e08c3ff26955 *tests/testthat/test_tr2g.R
1d75c59138fad67cec4848bd71179aa4 *tests/testthat/test_velocity.R
7583278c8c598d95a35303bf4f61a123 *vignettes/sparse-matrix.Rmd
3e3c95a94e06a1551f3d14bfb109b098 *vignettes/tr2g.Rmd
