0d64f92c0bc8c2b2c543e0c95590aac3 *DESCRIPTION
84dcc94da3adb52b53ae4fa38fe49e5d *LICENSE
2c1afa071f9f74c9f43588e74d14f9fd *NAMESPACE
1288d5036dfdc877139ac4a0829ae4fa *R/betaParamsEM.R
4293baea762c9c9adb3247db16480a9e *R/betaParamsMStep.R
3532911e3e36dcf4c40e7f079cfe47bc *R/computeProbs.R
d435178bc1ec25c5beb3179a682da8b7 *R/computeStretches.R
c407dd8f832b702a45132117738a30bf *R/findPatternPos.R
5b45f224f7a782dafb35bec2f81295c4 *R/hmmFwbw.R
bb4012b53a3019d84f8081da804d7b40 *R/nuclPerm.R
27009e7fc86d69695c2a52532a30813a *R/scaleDOR.R
32cd5a1f6111a269ee01ed1a1386f248 *R/selectNuclPos.R
3f826fdb213ae630860ecd169d107ef3 *R/stabiliseVariance.R
ac085f3cba7d95f369c3dbec4a5d8b96 *README.md
56992a316817f3c1a34b857e636ed92e *build/vignette.rds
899bd6cc6b582aa34ed1b0ecd32522cc *data/covFile.RData
3cda4390f107353ff0853ea1f4b482a1 *data/docFile.RData
2d6c6a84329a353436c3352e0ead38a5 *data/dorFile.RData
efc0b487d439ecb9ec6811214a95b92e *data/se.RData
85aa7d34b02297cf866b425e8e9f8366 *data/seq.RData
e1d23759761c452fcdb41a0be21bd449 *inst/CITATION
3da8513b661a28dffd0e756092109187 *inst/NEWS.Rd
3c7333c39544c9978b8866b02878e676 *inst/doc/BUMHMM.R
86943685c6a2fbbc2bbb32d63a5d7f86 *inst/doc/BUMHMM.Rnw
257e1cce2ad7087b1f9663da7c708b15 *inst/doc/BUMHMM.pdf
7e46cafd7f7fc403632e668157f3de26 *man/computeProbs.Rd
5e267fc18c8ee45fea31ebd38bef412c *man/computeStretches.Rd
6b01a598ebf6f7e2049afba8055469c7 *man/covFile.Rd
340fabb845ec4f6be4feff7233f2475e *man/docFile.Rd
1ccc0bba585d15cb6a70d2752acfde3d *man/dorFile.Rd
b77643cb850fb52dabf809d3d9584e8e *man/findPatternPos.Rd
33ff824316d2ac8afeab00e6146ba9f2 *man/nuclPerm.Rd
912e3e5d7b6a1243be76b022f4d0f2fe *man/scaleDOR.Rd
7bb044ce63aa3c12698339ad8f090095 *man/se.Rd
8b467bed5944a81da4c5fc6b0f1b94f9 *man/selectNuclPos.Rd
dfefd136609ce833ff72a77399db79df *man/seq.Rd
22d415c33239d1321b6e918d33ca444d *man/stabiliseVariance.Rd
6ab472d3f50c347c4c5f0a5f8ac37603 *tests/testthat.R
babb035e21610ae821f5f54675c5e0c2 *tests/testthat/test_computeProbs.R
b2e83e717b612205dd60d19f6ecdcc6d *tests/testthat/test_computeStretches.R
3c3af39af869613720ab496dd9a42768 *tests/testthat/test_findPatternPos.R
70755e47666ed43ccd87547fa1dc2df1 *tests/testthat/test_nuclPerm.R
e2724405620499f507b008e77d71706d *tests/testthat/test_scaleDOR.R
c4412a93c5bfbdf598b0da903cf5d24c *tests/testthat/test_selectNuclPos.R
d35e110052af59a92116d4dd756b5da4 *tests/testthat/test_stabiliseVariance.R
6783b988ca62224c75faf3e3806cc0bd *vignettes/BUMHMM-concordance.tex
86943685c6a2fbbc2bbb32d63a5d7f86 *vignettes/BUMHMM.Rnw
e039c80e01159eeeb492904012dae336 *vignettes/toyEx_structureProbing.png
ab43a06c214b09b579989ec0b7959b3d *vignettes/vignette.bib
