582e4e6c725913bc1a6c7a2d142e1eb9 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
b11e98b9503e068fd525f281fa653050 *NAMESPACE
d53f1e939f00827c4200ab3531d1e45b *NEWS
d98e9151e1378292d55cca991d284a9a *R/BEclear.R
4502b591a2ed8ee4ab4627e74e0db5ed *R/RcppExports.R
965365336446f7ab364cc6cfe9c7c508 *R/calcBatchEffects.R
d7cf64f5dfea1f89db8a2a63aacf4344 *R/calcBatchEffectsForBatch.R
4e96bc48e1050d6efb3b21e761d7e107 *R/calcBlockFrame.R
c11fd7ef604328daaf74b13f5cea695b *R/calcPositions.R
a6c6d414aee2b378eb51553b5b3ab328 *R/calcScore.R
ef1c58a8a988f129145c045899cd82e9 *R/calcSummary.R
e9500de5d347c40fd2bcfcba69557030 *R/clearBEgenes.R
8eb4105c4a437bba0eb65a4c07f04294 *R/combineBlocks.R
d96187bf87a13c2c85013e1bbc491a36 *R/correctBatchEffect.R
7d74495505cb3337880c4e37666796eb *R/countValuesToPredict.R
e438e7f82bf045a81a377c797a57bf13 *R/findOutsideValues.R
ef2f0cbc7287fffa8ac43cfa7ddc1ecb *R/gdepoch.R
9986f56f400f01c5805b0752f29b3f25 *R/imputeMissingData.R
c84fd6e5adbf9754036f31eaa3d11b3c *R/imputeMissingDataForBlock.R
9b75b697c187f916c932345fe4443e94 *R/loss.R
a2855a825dcfafe1c4bf94e355c64af8 *R/makeBoxplot.R
5883c7dc3e73af0805e216aa081e177c *R/preprocessBEclear.R
550978ce0bc7d6792538a5e8db045c95 *R/replaceOutsideValues.R
4c179c9ee611fd2b3f7b8ee4ba1b32b2 *R/runGradientDescent.R
5a718e900cedb7e7b450c8cc53b0aade *README.md
ef5b522d70b97e435db43434f9dde181 *build/partial.rdb
9ad1cfa724bb142821475e3b594e208a *build/vignette.rds
8dcbaafa17a6370582abdc66fc2a7889 *data/BEclearCorrected.RData
9c8c480319653b3c2bc59eb42b982d5a *data/BEclearData.RData
1cf1e3dd95e9a2c07f99ce6bf953168b *inst/CITATION
a65162d9875d617dadd8c2d9d5c58615 *inst/REFERENCES.bib
745a6aaa62827107eae7758732693485 *inst/doc/BEclear.R
27db74cfc4b746cf6cd907f8c245e6aa *inst/doc/BEclear.Rmd
e5d2ad3dc7715db8f5d6ac6bffa83a4b *inst/doc/BEclear.html
7f72f96ecc6863b6ae3a91bcc794826e *man/BEclear-example-methylation-data.Rd
53d39bd38ff65e0f80831a99f11cd090 *man/BEclear-example-sample-data.Rd
afe1208ff0f13419a8ee4ea4c9af34d3 *man/BEclear-package.Rd
4daddaf7f7949ab3e5a715fa158b2c1a *man/calcBatchEffects.Rd
6ef329aa2c50aa9fb94b9c9a17c429c8 *man/calcBatchEffectsForBatch.Rd
2dd1abc703a3dbe4797366df678b0128 *man/calcBlockFrame.Rd
071ef7da69e3158c2e8868b743b202da *man/calcPositions.Rd
a2d5e6f1674c808a07158a7cb8579a6b *man/calcScore.Rd
0be63e386064ec8d7c19139b6b3d64ac *man/calcSummary.Rd
6893acbdfc2151efa0c3c8a444e9d3f3 *man/clearBEgenes.Rd
2add74d8653dc39f0e34fea5de5dbbcf *man/combineBlocks.Rd
34c80e4763d5dda054971ea8a7cb3444 *man/correctBatchEffect.Rd
44aa6eea9577d1e3d51b8bcbd79c8b58 *man/countValuesToPredict.Rd
1a114b5faa07f416790176720e31b659 *man/ex.corrected.data.Rd
66f297140d6ce34780c00d9b105d5f74 *man/findOutsideValues.Rd
3393365e61aec2151f35ed35533ab042 *man/gdepoch.Rd
dcad7049f5a8b0a27ab11ccb2399fba1 *man/imputeMissingData.Rd
c64a6a993803bd025ed0c0b48c7acfa8 *man/imputeMissingDataForBlock.Rd
f894cee927aeef8a8eef9a8d393d120a *man/localLoss.Rd
82cfc219efb2e3dc98e6c6083ed3351f *man/loss.Rd
d414bd2f9be0df50a13b80e305a540c2 *man/makeBoxplot.Rd
513a96849720641227300711750d9cbc *man/preprocessBEclear.Rd
08ba4db211cf8e64c7d12ca805f685d3 *man/replaceOutsideValues.Rd
2ac0f97072da9a463170be61dfde5ce1 *man/runGradientDescent.Rd
2db38da7bdc2530188079c883d555d42 *src/RcppExports.cpp
646d108ff007712b2e3fb506c253b535 *src/localLoss.cpp
6106b9017f045ea65005c1a08d4e54b8 *tests/testthat.R
e36ba167f4003ff57c26afca3526942b *tests/testthat/test_calcBatchEffects.R
2c480e39c8e67f33a6f55cfd6c2d9c0f *tests/testthat/test_calcBatchEffectsForBatch.R
aa783040954bafbcc41f931605ad4b51 *tests/testthat/test_calcBlockFrame.R
68869916ee628e02a38028df9d1e1e8d *tests/testthat/test_calcPositions.R
d8db4116a05f4f6f770b2dcc3d00432b *tests/testthat/test_calcScore.R
843ec973a9548a6e4d4f9588e56b4daf *tests/testthat/test_calcSummary.R
a2901bedb2b4f2a12f1147b5e7df3969 *tests/testthat/test_correctBatchEffect.R
1751c45bf027b5dddeb3eef4a8b83834 *tests/testthat/test_findOutsideValues.R
26873af0ab35bbb29f5cd40b81f347aa *tests/testthat/test_gdepoch.R
2fa10be6d6cd69ae6def02789b0be99e *tests/testthat/test_imputeMissingData.R
d3093aa104f88624293934f676bf9457 *tests/testthat/test_localLoss.R
74c54e842ffa508e968ba523cffaeded *tests/testthat/test_loss.R
2d412ebac4d787b11b3708f513399729 *tests/testthat/test_replaceOutsideValues.R
000e99110eb7b35edbf1918bffd397bc *tests/testthat/test_runGradientDescent.R
27db74cfc4b746cf6cd907f8c245e6aa *vignettes/BEclear.Rmd
