2c5820ec67f841c64ac65e93233caaec *DESCRIPTION
55dc52adf579865f83f454600dfb427d *NAMESPACE
b54a8a174cead539ed88b7c2250ce6bb *NEWS
9d40a8e645bc5e524da62289c62d60f9 *R/Class_BANDITS_data.R
fec913438a817599a900f1126bedfd0c *R/Class_BANDITS_test.R
278766bbd1882d058a6613ba7da259ae *R/MCMC_Together.R
61d58157e0e28abd7a4ef33c3c233b2d *R/MCMC_Together_MultiGroup.R
176cfaa70939c92fee2481d023d6e353 *R/MCMC_Unique.R
a42620ca6277ddef77dce221c7953d04 *R/MCMC_Unique_MultiGroup.R
c2be66eef178308ed1d4ee231839aadf *R/MCMC_functions.R
1372325656692778771944c1aef274e3 *R/RcppExports.R
c75dfb700509a77a64ef622859112399 *R/create_data.R
fd3c90a099020775cc80aec4b7acfc95 *R/data_gene_tr_id.R
0bfb4cf4b7cc89bce2c1a5f2ec7cbc6b *R/data_input_data.R
0525d5341dfb6ae6ba00218de7cda50f *R/data_precision.R
f5d748e2eca80f1bdb8e430bc9c44b1f *R/data_results.R
54b3cf347123a52bf1fd6b812fe064cd *R/eff_len_compute.R
806da0d98324c1b2dccd32072922ba0d *R/filter_Genes.R
5ed8402b36573a1c60b414ccdfd67ce3 *R/filter_transcripts.R
1dae434cba0517f4f319fd8e18746efc *R/infer_only.R
ade722a6ec25c1c3ba112c80de9bda9f *R/infer_only_Together.R
756e5923372c0c3f87d8e767ef2392cd *R/load_kallisto_data.R
625b9a16470600ed8cf2103f2fa080e9 *R/load_salmon_data.R
1b323e100e4702c62664dbdca13af373 *R/prior_precision.R
5bfbdecf69e20fdce091ce62128fa098 *R/roxygen_tags.R
7db9ac4fc2bf3b1b26b1bc888b1945c7 *R/run.R
dc5b7df3ce1d092778032eb7da368cdd *R/run_Multigroup.R
971a8d79b9ddbf47e68645b4d45d91aa *R/run_OneGroup.R
4fbe9ba4be606407b1708e4a4c0fc32c *README.md
0d8cb9f64f3acdfa201decc410df7883 *build/partial.rdb
25526babad11c8e7e60578e68fa25192 *build/vignette.rds
fa78abc336da3c3b9a9aa3b87147b666 *data/gene_tr_id.RData
3a6a5e08ede2814666d7442e5f4dd23b *data/input_data.RData
95c5e02bf29ffa3ea70046667b8fad6f *data/precision.RData
7798bdce6b46c556504c55dd315c6185 *data/results.RData
f867ef2eb3f28f160e9de94434efef0f *inst/CITATION
1440a19a90d9d1e33bb96a97bce2cd33 *inst/doc/BANDITS.R
9196d7aa4b15278cea5b3e3f86533fcc *inst/doc/BANDITS.Rmd
e888d68fa42879f24ff3b11dd2fa1d34 *inst/doc/BANDITS.html
d0d71fd090791f418d2d8cb6e6cb25e6 *inst/extdata/BANDITS.png
1e46e955f41ed88b1d46c815617ed3ae *inst/extdata/Homo_sapiens.GRCh38.cdna.all.1.1.10M.fa.gz
4767e475f476f9735027dce85927ad51 *inst/extdata/STAR-salmon/sample1/aux_info/eq_classes.txt
284d76bc532199efdd4e6ce00d9951f8 *inst/extdata/STAR-salmon/sample1/quant.sf
6c7e1aafe5309c86dba966bcf0a7678d *inst/extdata/STAR-salmon/sample2/aux_info/eq_classes.txt
728051b8bf8a1aa7d7c8cd13c8061eb1 *inst/extdata/STAR-salmon/sample2/quant.sf
41c3e2d9bc12994a0564411fdd08eca3 *inst/extdata/STAR-salmon/sample3/aux_info/eq_classes.txt
60ce956b362bc2c4b59aa15a080cb279 *inst/extdata/STAR-salmon/sample3/quant.sf
6f8a2789dcc106214db3a6995c41d7d3 *inst/extdata/STAR-salmon/sample4/aux_info/eq_classes.txt
0a971c36c8d1ed4495d07c79dc1403a5 *inst/extdata/STAR-salmon/sample4/quant.sf
a62decdaf623c81281a603b9f03cdb18 *inst/extdata/kallisto/sample1/pseudoalignments.ec
47d3c49f880dc70fe7e3b42047439205 *inst/extdata/kallisto/sample1/pseudoalignments.tsv
ad9ae9febebe9127b278b404716b37f3 *inst/extdata/kallisto/sample2/pseudoalignments.ec
2478029c51ce56617f2d3a7a657ec92d *inst/extdata/kallisto/sample2/pseudoalignments.tsv
40b8eea1379d6f17ffc3578e79bbad40 *inst/extdata/kallisto/sample3/pseudoalignments.ec
81ca4f3abb380036459c8fec7c1dafe9 *inst/extdata/kallisto/sample3/pseudoalignments.tsv
1a211cd7c4eaee867fc5befbf1ed4be7 *inst/extdata/kallisto/sample4/pseudoalignments.ec
900afd315b68fa9b589500d7e6dca0da *inst/extdata/kallisto/sample4/pseudoalignments.tsv
7c31ea31ca5e847da56a1b79b827d1c3 *inst/script/extdata.Rmd
258c29e2de4f2aa58732fb2d6bbfde46 *man/BANDITS-package.Rd
fddf514fc97e7819e0c1971606535a12 *man/BANDITS_data-class.Rd
e5da28cf08b5e7e2a93ce8fb7c112a39 *man/BANDITS_test-class.Rd
f3f00f810d819e91d3652d47a522200f *man/create_data.Rd
c48dc3a21cb50127a74cdd10f8dd51d8 *man/eff_len_compute.Rd
f3ab4b193a2932e301b7fb456d5755d1 *man/filter_genes.Rd
9b56dc841041a4f48a71013021b93b0f *man/filter_transcripts.Rd
38c83d88ee46eaf3f40d1b8a7e014b6e *man/gene_tr_id.Rd
fa4b90026d52069aa0dbc1e112cb16d1 *man/input_data.Rd
3e9c1b26f3f45f1284734e05d26b95de *man/plot_precision.Rd
da43308128003284b92978777fc189ed *man/precision.Rd
ce72d4cb9f2df7748b10d3c3465e1e16 *man/prior_precision.Rd
24e28fad523198acf2afdc9f42bf456e *man/results.Rd
0ff364804136a12d3ce870e90c2029fc *man/test_DTU.Rd
531e87971a4468f68872453f8ea2eee6 *src/Makevars
531e87971a4468f68872453f8ea2eee6 *src/Makevars.win
cc00def4440c660754ed562fcb182e48 *src/RcppExports.cpp
e9eabed7834a21235ed5c766ebf1d5cb *src/Rcpp_Together.cpp
6a17944f4ffc91aeb2818e84b8602445 *src/Rcpp_Together_MultiGroup.cpp
c748d88f49d5fec8db564869c1f470a0 *src/Rcpp_Unique.cpp
1d951fd3dccebb708bd7d34373fa422d *src/Rcpp_Unique_MultiGroup.cpp
e80cfd49c0763dd2cbe6c90a6454669f *tests/testthat.R
7a287adc9e55b78be6e4c26918c82509 *tests/testthat/test_create_data.R
f2cc7c2edd04147d95248acff4dbe410 *tests/testthat/test_eff_len_compute.R
be28820dfbab20771246c77f39e189ea *tests/testthat/test_filter_genes.R
236f1a8a0faed486b42f61fbc89346a1 *tests/testthat/test_filter_transcripts.R
7c72c0417e16f2fdb8deacda8d7f5f8e *tests/testthat/test_prior_precision.R
ca0ca4ad5e6b0fcee05e32965e629941 *tests/testthat/test_test_DTU.R
9196d7aa4b15278cea5b3e3f86533fcc *vignettes/BANDITS.Rmd
a82ec67acc70887b9917ad2c84fbe852 *vignettes/References.bib
