ddd5f0ca065cd8d25d7f84613f9a51cf *DESCRIPTION
77e5beadd052fc0975e2b68aafc76818 *LICENCE
4735b601e14eaeba702ce5e5bc0c1f92 *NAMESPACE
f5ab4fe3c31176da6b216890fd034e05 *R/annotation.R
7ca33b8a8076457fdc668a27ce611dfd *R/de.R
b381d2f030ee4051cb3cd379dc258bcd *R/force_alg.R
7a19639c7631cbac5d37938c068e5625 *R/gatom-package.R
d3b9a0d4f87cff10cec069fe83ffffc8 *R/gatom.R
2bdfc4669e569659c26075d563da26ef *R/io.R
878a7af8044ff2c497f88a4094954ecb *R/utils.R
e9cf206c11bf04bcf86644d28e2b7850 *README.Rmd
e4ed2844eac5ddb803b7789fc5f7f2d1 *README.md
1429b84a44a879a5ef5fe695b74f1dd2 *build/vignette.rds
df7044887de88bd2d444e4d14de77d14 *data/gEx.rda
7a7c47b9b4cc97ed0d821596e66ebd60 *data/gene.de.rawEx.rda
6cf6c3da7f4108c1d88d09722ea87593 *data/gsEx.rda
9d2d7ce7030a37abf0f80561375a089a *data/mEx.rda
e195450adaed635af7648316d5177740 *data/met.de.rawEx.rda
c604de9f8118f5347e61fd8c005150ea *data/met.kegg.dbEx.rda
14ddad46a9cba90b9573d8df13f0a3fe *data/networkEx.rda
af600a9909c712bb043e9afe83e0a067 *data/org.Mm.eg.gatom.annoEx.rda
0faeaaa726448a5231a13fc1a81e0bdf *inst/CITATION
12a888663cfb6cabf02e94eda806e592 *inst/M0.vs.M1.png
3e30845e91465f48c440f771f282593b *inst/doc/gatom-tutorial.R
0e97570a77c10b88973efa1c2131a57b *inst/doc/gatom-tutorial.Rmd
dcd9c0b5747bac397b7a87fd1963656d *inst/doc/gatom-tutorial.html
7d278f49ea567a067057041b2002daec *inst/extdata/README
970efb81b637505919e2ebb0a5efc9dc *inst/extdata/mets2mask.lst
8b9d8ad68dffd16eaef7c831e1a2fb82 *inst/scripts/example.R
b3be6cf1525db7b4d159605b6b1ff18a *inst/scripts/make_annotations.R
fcbe0f4131280e30808a99cb8257eedd *man/abbreviateLabels.Rd
2505dd6e0757d221b733fe1a66f99eb3 *man/addHighlyExpressedEdges.Rd
287d040ed09917d5eac3fb616961a045 *man/collapseAtomsIntoMetabolites.Rd
2555b79c626d909df0e46e1b811ece5e *man/connectAtomsInsideMetabolite.Rd
85eb4d969773452c6f188e7325721b6a *man/createShinyCyJSWidget.Rd
26a1a8a23e8341a959ede82ec164c266 *man/gEx.Rd
288c082967257b4e6204320ba3d6b559 *man/gatom.Rd
caa5e1c3ca7a5d4f1ce81411ae7882a9 *man/gene.de.rawEx.Rd
1a9cee3cd121745d86c02915abfcb73f *man/getGeneDEMeta.Rd
d0d8edf8ffdb82a0146179b446750c42 *man/getMetDEMeta.Rd
d01c68d35ef1cd38a3bc03dfced1bbc2 *man/getMetabolicPathways.Rd
acfba3f0f9f4a4dd233f7b884e9491b6 *man/gsEx.Rd
cc07eab2383a44d69e797ab804965939 *man/mEx.Rd
3b107d17cfec6a8dca5ea403c16caa01 *man/makeMetabolicGraph.Rd
6faf0601936dd343041eaf17b3067701 *man/makeOrgGatomAnnotation.Rd
a0e14b8c51538cd0cc3f87832fc0266a *man/met.de.rawEx.Rd
ea3d4a6a960cb3097ca62fd1232055b9 *man/met.kegg.dbEx.Rd
7df71b86071e27568f00ce86a5bd0ada *man/networkEx.Rd
8b8aa9c83b757201ad3e607e4328d920 *man/org.Mm.eg.gatom.annoEx.Rd
b64718b682d234645295132526b4de29 *man/prepareDE.Rd
a03132300b3197fd0f50171004b06b92 *man/saveModuleToDot.Rd
4be0bab3f540953424eaf3791fa122fa *man/saveModuleToHtml.Rd
510b79df01a8b4196c7cf8ed3090c8a2 *man/saveModuleToPdf.Rd
0998f93f5dbacab51dbd44e4a9b8d9bb *man/saveModuleToXgmml.Rd
4f2ac0f7d4e4e769eb786c59ae51d36b *man/scoreGraph.Rd
30c0852cc1280d57dcea76bd50fa0ee4 *man/styleWidget.Rd
3eec1d2b091e35261e84788112395c28 *tests/testthat.R
395a7702924cee3a593829b66a938e26 *tests/testthat/test_annotation.R
ab5d6afd3ffb193bcc157124759fa8e2 *tests/testthat/test_de.R
e6960f6fc919b1fa6496821b125df9a0 *tests/testthat/test_gatom.R
2aeca3480cb72d4eee2110453a2e4840 *tests/testthat/test_io.R
0e97570a77c10b88973efa1c2131a57b *vignettes/gatom-tutorial.Rmd
