c152fcf3d5012bf28cfda062e565089e *DESCRIPTION
1b9985216bc26353a5b84ad3cc70d44b *NAMESPACE
6f53832371460f1422060965bb3638f9 *R/SplicingGraphs-class.R
66b47054a34ea942abaa9bc9096f872b *R/assignReads.R
e607a6828426edb8083f854b62847557 *R/bubbles-methods.R
d9ee5d3f31f6ab377126b29be088cc5f *R/countReads-methods.R
2c07f3d31e105d21b7e12bc8d81acfaf *R/igraph-utils.R
e8ac006b85ee94ab476e9d4d77820f0c *R/plotTranscripts-methods.R
83f50d39f3e8e625bcd00d5b3eae9a66 *R/rsgedgesByGene-methods.R
5f09ed49ccdd45172ba5d39318d0f7ee *R/sgedges-methods.R
84cd29ca73cccf887bac767535a23ef4 *R/sgedgesByGene-methods.R
161a6a94d884f7ea467f77a98583db11 *R/sgraph-methods.R
50704821e36c1ed4a1e87ccb3fbb8e30 *R/toy_data.R
c85641d95ce49bc24247b64485f831e7 *R/txpath-methods.R
0feb6a4d313c8193f8d308ad0099898e *R/utils.R
e0fb3e2a831aa18e091d3a8e8c29ccc6 *R/zzz.R
4d2f483dcb6c71456f80e8aff6960e91 *README.md
956c25babb6e600f8e2893eb20fc0a4d *TODO
c85628edf8b2c7605e91470bd8aaebc4 *build/vignette.rds
d1d155985482a003893825bae1181f02 *inst/doc/SplicingGraphs.R
8e772f322a2f2ae586804ae50e60e6bf *inst/doc/SplicingGraphs.Rnw
a5fe30b8d8b203a7500a367ed69f459f *inst/doc/SplicingGraphs.pdf
e927d6e86c26ef2f567f538e4d02c6bb *inst/extdata/ASpatterns.txt
b10a130d5d8e8aa34a67c0676e678e42 *inst/extdata/TSPCsg.rda
2496dff4893d460511d871a0c485aa6b *inst/extdata/toy_genes.gff3
648ca39416010bda3340da48c26912ef *inst/extdata/toy_overlaps.txt
62072a44e72d0ea965e19a12820417ca *inst/extdata/toy_reads.sam
34234e7c550cf53650d973cb48dee466 *inst/scripts/TSPC-utils.R
0ee9097358b000f70562de18bc67a066 *inst/scripts/create-vignette-plots.R
44830c9a0141fe8277304d7419d7a20d *inst/scripts/makeTSPCsg.R
9d4c8d07718b4c1cf96e0c344ddf363e *inst/unitTests/test_countReads-methods.R
df29f8dccbabf15066c8e2464461b487 *man/SplicingGraphs-class.Rd
9eebd3a0736897dbc7deff1ec4fc1d04 *man/SplicingGraphs-package.Rd
f20c3dc53ddf6929f1b1dc01844b230c *man/TSPCsg.Rd
7bffd2ee386923ea742faabd144275ca *man/assignReads.Rd
ac5b7cf252a7922e4c6251c8463fde6a *man/bubbles-methods.Rd
4b8e35373f496755df53933c88c5c2d4 *man/countReads-methods.Rd
c29ece961381bdabdd1d547beac65763 *man/plotTranscripts-methods.Rd
c0f3b684c6601d630f93889f38ae2050 *man/rsgedgesByGene-methods.Rd
62d22c61a1ebd1d080f26e213f3decb0 *man/sgedges-methods.Rd
71cb447b6c66e07093a1b9c97430d432 *man/sgedgesByGene-methods.Rd
44d4fcacc274b75a3a9c8c8c9e0ed3cf *man/sgraph-methods.Rd
a8c21ae51d0d2042346a4a283bf3c13f *man/toy_data.Rd
ae1f0d16f0d8a037ce2856c81eb811a1 *man/txpath-methods.Rd
fb0ebd1e3703014da829934be56f19ad *tests/run_unitTests.R
8e772f322a2f2ae586804ae50e60e6bf *vignettes/SplicingGraphs.Rnw
72c02779b4ea3e141516e5ef6d4b2e23 *vignettes/images/CIB3-sg.pdf
79a843ca588b11b68271efb3920b15c1 *vignettes/images/CIB3-sg2.pdf
003abc9f995dae24e8fd4647f9bab11e *vignettes/images/CIB3-transcripts.pdf
6ddcfdda9409af75017448711898e5bd *vignettes/images/ZNF813-sg.pdf
b3ec3b9f013fe0b33240e21a4f9bc50e *vignettes/images/ZNF813-sg2.pdf
3e17be389aed0cb68e97b75c1af78778 *vignettes/images/ZNF813-transcripts.pdf
448ef23ff16677eb6f55031911765993 *vignettes/precomputed_results/sg_with_bubbles.rda
ae9c958acb60f6d077c4f1a71d6d5288 *vignettes/precomputed_results/sg_with_reads.rda
