8b4d70e375ddafe089b10126c12f3f66 *DESCRIPTION
1325f6269ba8e5b8d005ce17e42de56d *NAMESPACE
87216d97fba655c881bc0b292e00166c *NEWS.md
c5efe8b089a78ee7d95b47307e2fbc00 *R/AllGenerics.R
71e4f263fc301ad2399e2a9586aa04fc *R/SFE-class.R
85a146e8d197b7080f70090285d0dad2 *R/aggregate.R
5f851d7d6d85b0efc503785ee0c3a3c8 *R/align.R
e6da738bf23847d25611f6f872d583af *R/annotGeometries.R
71cfc6128df95751c115fc0e6fa410c7 *R/cbind.R
c30c5795ba57a307af990435513469d8 *R/changeSampleIDs.R
dcd74e5dee24845e1cbe2aeab7db92b2 *R/coerce.R
f9245d212f076e19a1125fdc66cab4fe *R/data.R
65f9442cc6888039f51688715313bb89 *R/debris.R
1b29bb175caf4bd5e9be9e6122a45142 *R/df2sf.R
e25a5480cddc018531d168ba349cacc0 *R/dimGeometries.R
061ad7bff959dbfc435b668340d01449 *R/featureData.R
8d0cbf5461a0b3199fbc3293d100d9f5 *R/formatTxSpots.R
89f84e8e824e2e1965fef067707b51c6 *R/geometry_operation.R
7133dd71e1e8ddea9ccc7e38b1f79505 *R/graph_wrappers.R
ddbe660f2ead0346b742a9797608bd45 *R/image.R
ef1297b64c0adef762c840c75639a198 *R/int_dimData.R
310d19655070224a3eddb6f7df7e7ac7 *R/internal-Voyager.R
75bc3cadb7213a135d996dfdee53c111 *R/listw2sparse.R
84d69e8389ef806720728cf481d2e235 *R/localResults.R
53b468c2730955a2e27f427e86e0a7a9 *R/read.R
93206e2f93438ad7f6f31522091865f7 *R/reexports.R
5cd4f22355c03b0a1154dde086db302f *R/saveRDS.R
15982fe7955ac01bc2fda825f88ea403 *R/spatialGraphs.R
23c55dc7639f5ae3754ff92064820a43 *R/split.R
a71d35fce622a2d9aa3dc47fd3b7e28a *R/subset.R
1b5f0074519c9c9b721329079ad19ac2 *R/sysdata.rda
711764816a35e66d2467ecf19fda9ca3 *R/tissue_boundary.R
424ebc5a5128469e4a30cb0fe0476ad6 *R/transformation.R
ce6d6c54849338d32b8782dc35d563fa *R/updateObject.R
8416c660fcbf4cb7c45b47c75dd43c10 *R/utils.R
273da703a422a4a56a2909a4f4f80b4c *R/validity.R
aec5ed4e7cc10f5fae805b425433ab77 *R/zzz.R
df0df9ce7e3e1bd5b4797b54b4c510e5 *README.md
f01e3c6dcbf01c9500efd3d3151b00e2 *build/vignette.rds
1b5f0074519c9c9b721329079ad19ac2 *data/visium_row_col.rda
15612ff2db88d6bee1203b53206e8111 *inst/CITATION
cb67fee601721fc9256bde48915fb98f *inst/doc/SFE.R
50083a4aa3166808f3d6ed49305fc3e7 *inst/doc/SFE.Rmd
ed760f5e65c7dd7c6f450f26de227cd4 *inst/doc/SFE.html
4385b55cb0740b455e79b2b9e198d8ba *inst/extdata/ag.rds
97e3ed271dcc41452bf0062f499ff013 *inst/extdata/ag_samples.rds
a72e4d8e33d9cbef66103c2ad509e5b0 *inst/extdata/annotgraph1.rds
c956adba0ace55566dd473827eeaf536 *inst/extdata/annotgraph2.rds
b52be595ad082f23898a838f55b470b5 *inst/extdata/cg_toy.rds
8a69aeaece487a380914bdb4c2cbcda2 *inst/extdata/cg_toy2.rds
cc4163b025caeb8ec20c7520aeeb1413 *inst/extdata/colgraph1.rds
1da21bf2e9153cc90fc01cffc454bbfb *inst/extdata/colgraph2.rds
959a323c8b4e3a9b1d1770d9de80f36d *inst/extdata/colgraph_visium.rds
7f4dca31d1b58ea125491c0a3bdf8731 *inst/extdata/colgraph_visium2.rds
3258478ac570d5857e9c88cf361f9616 *inst/extdata/colgraph_visium_sub.rds
a0edd94a1c84ed3fda20def27ab4a936 *inst/extdata/contiguity.rds
e41dd815b59d5a702c371a0ddb1f1893 *inst/extdata/ls_df.rds
e3635574951ddf4552551f02d74dc454 *inst/extdata/ls_df_singleton.rds
9ca1b8b9d8a875f269a72f961076bbb1 *inst/extdata/ls_sf.rds
951cb4e6c7d2255a464d609b9aaaa391 *inst/extdata/ls_sf_singleton.rds
b32a68ecca39467ef9d9c2f2cdbc48d0 *inst/extdata/mpol_df.rds
3e6878bc5b646dbaecc8ac4e8f89043a *inst/extdata/mpol_sf.rds
fe481e2ce702e859d1763de178cfc2ab *inst/extdata/multils_df.rds
8becc012a9b6882d8eeedf9a8817373c *inst/extdata/multils_sf.rds
3e94c2bc15832def8d8ecd1e77865331 *inst/extdata/multipts_df.rds
791931f5ffa9aaa7bf18fd463c7b1d56 *inst/extdata/multipts_df_wrong_sample.rds
ceb99c47607d81f940a10d0c0898519c *inst/extdata/multipts_sf.rds
76cd8cd425bc0de209ea58aecb36cfa2 *inst/extdata/pieces.rds
adf42bb7a0788e11f51984c5e56b3565 *inst/extdata/pol_df.rds
2ae8cde53c77fbd33245dd9adf24f79d *inst/extdata/pol_sf.rds
3b7e8e50accfd2054618cdf1e73d286b *inst/extdata/pts_df.rds
35809f922eb660c77b21b9e11e0041b3 *inst/extdata/pts_sf.rds
76739e4e4c5900b5e6193dce40ef438d *inst/extdata/pts_sf_dia.rds
a482ea1c89555894d865378ce9c49f58 *inst/extdata/sample01/outs/filtered_feature_bc_matrix/barcodes.tsv
59f463775648a22b23e6c5d72e2d1141 *inst/extdata/sample01/outs/filtered_feature_bc_matrix/features.tsv
a8933be65c7b15bfa80b56f4502e6ae4 *inst/extdata/sample01/outs/filtered_feature_bc_matrix/matrix.mtx
52a1a96b0276b9130b26f0a6791f142a *inst/extdata/sample01/outs/spatial/aligned_fiducials.jpg
8223b8fcb7c45777df072a696500f8e1 *inst/extdata/sample01/outs/spatial/barcode_fluorescence_intensity.csv
22726e33708bf24f2aa9738b17205ef8 *inst/extdata/sample01/outs/spatial/detected_tissue_image.jpg
41488513092e4f338eaf6cd07b3555d3 *inst/extdata/sample01/outs/spatial/scalefactors_json.json
39cf65f0a73a19d4338f3a6ceb18f20b *inst/extdata/sample01/outs/spatial/spatial_enrichment.csv
1c9c7c9e019522dd649b13efe2ca862e *inst/extdata/sample01/outs/spatial/tissue_hires_image.png
b195e44b7fdc4f54d2626790ab232d39 *inst/extdata/sample01/outs/spatial/tissue_lowres_image.png
71b419e7d13b3399cda5f0abe51393d6 *inst/extdata/sample01/outs/spatial/tissue_positions.csv
434fc24bad14aa1e99025925e4abe7f5 *inst/extdata/sample02/outs/filtered_feature_bc_matrix/barcodes.tsv
59f463775648a22b23e6c5d72e2d1141 *inst/extdata/sample02/outs/filtered_feature_bc_matrix/features.tsv
201b26ec434353109ddcf1a0833274ee *inst/extdata/sample02/outs/filtered_feature_bc_matrix/matrix.mtx
74b1e0b7108bff6d73e0db78a845dc4c *inst/extdata/sample02/outs/spatial/aligned_fiducials.jpg
21714cd7f27f83221f6c7c789e87c8e2 *inst/extdata/sample02/outs/spatial/barcode_fluorescence_intensity.csv
94488567e1690f11b0f49dee0d3372ac *inst/extdata/sample02/outs/spatial/detected_tissue_image.jpg
41488513092e4f338eaf6cd07b3555d3 *inst/extdata/sample02/outs/spatial/scalefactors_json.json
39cf65f0a73a19d4338f3a6ceb18f20b *inst/extdata/sample02/outs/spatial/spatial_enrichment.csv
222044009b9b3aedae539972f8057d25 *inst/extdata/sample02/outs/spatial/tissue_hires_image.png
843747460293421a3eb5629e1341d026 *inst/extdata/sample02/outs/spatial/tissue_lowres_image.png
eb0ff9ef317f143d915b9386bbf0545f *inst/extdata/sample02/outs/spatial/tissue_positions.csv
b0e4df6ddf5ecf8ad7b5d6d985abd28a *inst/extdata/seu_vis_toy.rds
c0f1b714d094090fa44bbb8f25f86a3c *inst/extdata/seu_vis_toy_multi.rds
b88aa06b69fe0a91eaec456f745051e0 *inst/extdata/sfe_multi_sample.rds
33d46c1e2dceac28b6fed80c27bea2fd *inst/extdata/sfe_old_spi.rds
0fa09cc99a5d427171001631d564c30a *inst/extdata/sfe_toy.rds
dcc9b8d0b5c04f9694ca1d5f8cbf0791 *inst/extdata/sfe_visium.rds
930fe2eb0f45ac59cde061d82e80448a *inst/extdata/subpieces.rds
a1e7cd486583e8170ddc85436751213f *inst/script/sfe_old_spi.R
9bdef1b796dbbddae2ca8b53fc3c5ca9 *inst/script/spaceranger_toy.R
286f89e851aaeb3928577016e271bdf8 *inst/script/test_rowgeometry.R
d89ee52ce7e7894f381eda10875479ac *inst/script/testdata_Geometries.R
d254eeeb32c80b83c2ee6a62319d2351 *inst/script/testdata_Graphs.R
b2f574b0c14092aa709acc06c70e88ba *inst/script/testdata_df2sf.R
05cd24634b4cd4ba92e89d3501ada0dd *inst/script/testdata_graph_wrappers.R
aa6dd8f17dd00292567cf9ec30e48090 *inst/script/testdata_split.R
aef47a857534cac6b6486ccd6b0147c5 *inst/script/visium_row_col.R
ea89ddee7e7650adcda43bc3a9678fb0 *man/BioFormatsImage-getters.Rd
ed6ab6239d2832582d9708cc7ff309d9 *man/BioFormatsImage.Rd
e0abe0143d76516b9138ff5721586a85 *man/ExtImage.Rd
976de98ec775ce0b38982b421efbdb75 *man/Img-set-SpatialExperiment-method.Rd
64e7a3e7ef5afaaf527998a18b6367b0 *man/SFE-image.Rd
7a7d7eb200354522be2b9f4b29ca9154 *man/SFE-transform.Rd
27fdd274c835d146cb13cc7b6a53e4da *man/SpatRasterImage.Rd
85c846e786567905eccbf609b092ba9b *man/SpatialFeatureExperiment-class.Rd
df96c832c4d5f9521c9181552e6200ba *man/SpatialFeatureExperiment-coercion.Rd
0660cd701457a4c29c2fc148d147f7e2 *man/SpatialFeatureExperiment-subset.Rd
9f9d72ae54ae61741d8a096d1c410809 *man/SpatialFeatureExperiment.Rd
66603e6b64d8f746ceef6550ffe3a7a7 *man/addVisiumSpotPoly.Rd
10c6ba2b3c078cf5e461766bfe371845 *man/affineImg.Rd
c9436989061e6f05a1eb8151a604f1c4 *man/aggBboxes.Rd
da6084639399ebed81c7fe6b42d09d37 *man/aggregate-SpatialFeatureExperiment-method.Rd
990367a09d0d89b95176966dd8f73081 *man/aggregateTx.Rd
48fce623af773607dce5834e0fbfccf3 *man/annotGeometries.Rd
89f5d6e596d1c858b0712827df7e82ce *man/annotOp.Rd
b4e74d47ffebb3479e417efe39d8748d *man/annotPred.Rd
463abbfde15e691a63cba3f1cd9114f2 *man/annotSummary.Rd
c9e2ed133433e3983e42da6cb2353fa4 *man/bbox-SpatialFeatureExperiment-method.Rd
010cdc2e776a7fffeea89d78b9f0c34e *man/bbox_center.Rd
1fc1b3ca89e1e6a263caf0d91ae8d404 *man/cbind-SpatialFeatureExperiment-method.Rd
6b706d3c775368217da510d3f219bcc6 *man/changeSampleIDs.Rd
61c62be70ce9f4a6e3045daf4f487843 *man/colFeatureData.Rd
7cbf2f550b36c7360610195e478a2b0b *man/colGeometries.Rd
994282441d8358010edd65963a24c55e *man/containsOutOfMemoryData-SpatialFeatureExperiment-method.Rd
f5c89392e9a1c372fdcb7b3b64723c0d *man/crop.Rd
30729dc5c0fba8309bc7cd11a30e779c *man/cropImg.Rd
6a154530a0dac026cf6f15544745d4b9 *man/df2sf.Rd
8f83cd628f130cd53d53dd090679dc2c *man/dim-BioFormatsImage-method.Rd
88defc50bcb1c706e8ccff92fd98a41d *man/dim-ExtImage-method.Rd
c36f3ebd81f41745653db003740dbce1 *man/dimGeometries.Rd
4675a45cebc4718daaaeaacf1af9f118 *man/ext.Rd
7909c35c6f9773586afa80f74454af6c *man/findDebrisCells.Rd
a232e638ce6688493679d9b8641eefe8 *man/findSpatialNeighbors.Rd
1e1c6e3bb1773af060231cfd90ff533e *man/findVisiumGraph.Rd
41d161c373a53b24594ebbec909f2710 *man/findVisiumHDGraph.Rd
45844556e49e41eeeb285f2b100b6838 *man/formatTxSpots.Rd
afdafdfc718874ce6ab050fcdac65cb3 *man/formatTxTech.Rd
8804ded421fba7b9d400e98f2676fd14 *man/gdalParquetAvailable.Rd
201106cce7615544085b8417c6287475 *man/getParams.Rd
7208817a12e4121516c603af02df8284 *man/getPixelSize.Rd
c51f7837b5683deef5166b9eb04ada6a *man/getTechTxFields.Rd
acd47008238e45069b7731ef52ae53c3 *man/getTissueBoundaryConcave.Rd
de2f3c3842c135105a98d5081af6254d *man/getTissueBoundaryImg.Rd
5c5d9a76ee97182a2d0ff5cbaa8f5ba9 *man/imageIDs.Rd
dbc6f5d8d5cd1385b30518abf16ace88 *man/imgRaster.Rd
0cf6feb81054336c92541bbec478fc4d *man/imgSource.Rd
15c2fae1da34f780418654a02f4d2079 *man/internal-Voyager.Rd
8dd4fd4a5c292a7808e91afdaf773d5c *man/localResults.Rd
5bd87c21911ecbd0aa15d4730505ec7d *man/mirrorImg.Rd
b4e50b1b6c3c7118d3b92ac2cf82c9db *man/multi_listw2sparse.Rd
03dabeeb158f15276a1519f9545ba2b4 *man/read10xVisiumSFE.Rd
40a5dad60c387d8f6974e85ca9e04776 *man/readCosMX.Rd
4f3d91aa184d2be5b67211f0e7f073aa *man/readSelectTx.Rd
03994e5901a05781de9fab656a22a556 *man/readVisiumHD.Rd
9ebaf5b275c30de83c93c27707620fa6 *man/readVizgen.Rd
87b0f10f46b02e5d986bb6b17b90e022 *man/readXenium.Rd
05d744968df19faf6ad07746c30329e2 *man/reexports.Rd
35da60ed0c38fa18f2071726c2ed2f73 *man/removeEmptySpace.Rd
b281e565f4e655572bd3c9ce1ab46a19 *man/rotateImg.Rd
6e8154d65ee7e51fcccf2390caf07b16 *man/rowGeometries.Rd
c4f44eca9acd95ad65e9e39fa629024a *man/sampleIDs.Rd
e1a1b6fa08a6088b55a398c0b2eec030 *man/saveRDS-SpatialFeatureExperiment-method.Rd
f8447ca6e7f6036d7c6b3a3392fc069e *man/scaleImg.Rd
f576d95267b5ffc1f0ad5d39f4a9dbd3 *man/show-SpatialFeatureExperiment-method.Rd
d9e764865162c641eca9af11f3f37eca *man/spatialGraphs.Rd
61e3f2a87d470382f42cf5bfc26cdcff *man/splitByCol.Rd
ba2770fbcd739f3dc0fa2b652d750162 *man/st_any_pred.Rd
ec7454bc6763edd43b1b24b918d66caf *man/toExtImage.Rd
532e68f3af5d8f42c4c3cba6c8f5fa46 *man/toSpatRasterImage.Rd
2b9280b923dc5ebcc31d708da5610b75 *man/translateImg.Rd
5891bda620269785f458b30fd8ebb48e *man/transposeImg.Rd
bd66c745b2dcb097e185d09a1b3f203f *man/unit-SpatialFeatureExperiment-method.Rd
4b1e0df3cb5ec0e0ac0600b479cad5b1 *man/updateObject.Rd
3044c83f4dd9a1c77a31c9d8ec3f225d *man/visium_row_col.Rd
02f6ae3aa75a2d7246c7fe9aa32dfbc8 *tests/testthat.R
884a277f57d3f6c7c52f3a2e1baa8fb4 *tests/testthat/test-SFE-class.R
44bbf7ffdf03c9543f792b27e2ce90df *tests/testthat/test-aggregate.R
a26bb2b6e6db5b1aafd3567e4e425d5f *tests/testthat/test-annotGeometries.R
fff8c4c0ddce5efd22d9a8c38348c7c3 *tests/testthat/test-cbind.R
1698b13624ba165c9c1123c5ccbe4748 *tests/testthat/test-coerce.R
bfde4bf9f0c9568e945370eac41946a2 *tests/testthat/test-df2sf.R
aa8ccac008fdc7a130fd4c0a84099f5e *tests/testthat/test-dimGeometries.R
30f5cd93cae1ef8a9a7414da8bab651b *tests/testthat/test-featureData.R
3eaaa540003190c943e9cd5312c8705d *tests/testthat/test-formatTxSpots.R
615827d53d213f95099ead0f4a440c09 *tests/testthat/test-geometry_operation.R
a7b606bf69356f7de5e77b8b0f65c945 *tests/testthat/test-graph_wrappers.R
2d3b6d3346df7220198dcfee47b71549 *tests/testthat/test-image.R
4d48118d33d859150dcc1f30fb0f6a83 *tests/testthat/test-internal-Voyager.R
f546decf3ea5038a71962526df9dc54c *tests/testthat/test-listw2sparse.R
e50e1662a18c0c1afcd7435662a28e3d *tests/testthat/test-localResults.R
df8f313664f522a454a56274c2cfcca2 *tests/testthat/test-read.R
ef1ef4774c5cf5d930a5721b024671e7 *tests/testthat/test-saveRDS.R
3cc6981c3575db0284fd5552304f6028 *tests/testthat/test-spatialGraphs.R
472b0af44bf472e09cbe90c93c320cf4 *tests/testthat/test-split.R
6e7ebd84c0db9e04f57e44fc9cfc7e57 *tests/testthat/test-subset.R
3b7c248af01de40f56b2a8951b289fee *tests/testthat/test-updateObject.R
19d9827f4fb19e2cec23b036d1d7673e *tests/testthat/test-utils.R
3010630c14f5b84905d74391bd1e75ff *tests/testthat/test-validity.R
50083a4aa3166808f3d6ed49305fc3e7 *vignettes/SFE.Rmd
6f28847e509cdcfd03bcc2b077ee4103 *vignettes/sfe_schematics.png
