3b428183188d26baf11bdafca73915ef *DESCRIPTION
bc63246ac5be978f0451fbb7744b4db7 *NAMESPACE
33a2edd3b8dd7fd9c1f45448016f09fe *R/alignSeq.R
efafcf7140ec2bcb60521d4b3d3fe42b *R/bhattacharyyaCoefficient.R
b68d1eed36325b157ebff352ffb447fd *R/bhattacharyyaMatrix.R
3a543c97bbead78300d58f037381b075 *R/chordDiagramVDJ.R
10a0c359eeb8a6a7ea0980c302401496 *R/clonalRelatedness.R
bbfa4701d52fe03bdccd175aac672c14 *R/clonality.R
b95231c708e459445fe3118b1af3277e *R/cloneTrack.R
246e2ee681b7c985b0a9997e2519b160 *R/commonSeqs.R
15ce7023177a768115cc493074a27dc4 *R/commonSeqsBar.R
d32eb55d5de96ea7abe84b086430972b *R/commonSeqsPlot.R
13ae4d1a94904fea96eca310e3c99cfc *R/commonSeqsVenn.R
dbac3b417b80de63750aab8f0da12697 *R/differentialAbundance.R
cd250184fc4eee32fb74465f0e13aa74 *R/exportFasta.R
f047d1bd8d918257c338ca3f715e22ce *R/geneFreq.R
eda9c3a2117acfe78ae0e7282153314d *R/lorenzCurve.R
b574488e7e3848affbbc1184c90c790b *R/mergeFiles.R
2738aed9b38ca5c602acdfb517ceedc0 *R/pairwisePlot.R
415d6806a708e71217f0eb6a3f09b761 *R/phyloTree.R
75715b87e942e5ecc62b269bd6919234 *R/productive.R
d6a4ac1546c40f397af208984ca9e769 *R/productiveSeq.R
184183c2dfa19e3723fab4129469a879 *R/readImmunoSeq.R
704b6f97f7588c186b3a78c9a82d18cc *R/removeSeq.R
c461ed4d0f7c4c9745f0b7333ea9348c *R/searchPublished.R
188e48241d09620f22a8029094540b90 *R/searchSeq.R
3395409083e9cbf6e95763d9ed774e2b *R/seqMatrix.R
457c37ea1998c90bc2f3b109dc42eb7d *R/similarityMatrix.R
53c65bc897e20bae29db63117b3cbc17 *R/similarityScore.R
4204a45954f8a9a65e4c78fdb8b011bb *R/topFreq.R
c569d826887541bec817f93dbbaef1ec *R/topSeqs.R
f61c80b31ee812649dcbba2841e760e4 *R/topSeqsPlot.R
cdb7ca1bf49e6acca943856f8cc3b8e5 *R/uniqueSeqs.R
f3720bb5c010bed609dc5aa2aa901d51 *README.md
042b1c7a37eeff5b91126e582ec7c9d2 *build/vignette.rds
ba5ae55525c6040c8fb977faa85bf84a *inst/NEWS
05e2e32934fd47ca03fdb48fcd13c686 *inst/doc/LymphoSeq.R
2b2006448020aad276f58300732eedfa *inst/doc/LymphoSeq.Rmd
ea251a3d8b34107fbf4f804353113f41 *inst/doc/LymphoSeq.html
d622dccee47062cae649b95d13d5c465 *inst/extdata/IGH_metadata.csv
435fccae4f3cac795815fa73001748fb *inst/extdata/IGH_sequencing/IGH_MVQ108911A_BL.tsv
458e6408e3e147195f6bcf410f86bbc4 *inst/extdata/IGH_sequencing/IGH_MVQ194745A_BL.tsv
435fccae4f3cac795815fa73001748fb *inst/extdata/IGH_sequencing/IGH_MVQ81231A_BL.tsv
2829d433ac282ab9a630acd54af58620 *inst/extdata/IGH_sequencing/IGH_MVQ89037A_BL.tsv
35290650396a6c770f8f60dfa243f200 *inst/extdata/IGH_sequencing/IGH_MVQ90143A_BL.tsv
3cac832a7a4a5f18cda3d3a734b015bd *inst/extdata/IGH_sequencing/IGH_MVQ92552A_BL.tsv
75af204503abc1e50264d9234cb359e9 *inst/extdata/IGH_sequencing/IGH_MVQ93505A_BL.tsv
7a2286df014a1ea42dbd2d7c93ccd7a8 *inst/extdata/IGH_sequencing/IGH_MVQ93631A_BL.tsv
21eaf08addb52ea78971ace9c7d301cc *inst/extdata/IGH_sequencing/IGH_MVQ94865A_BL.tsv
a64a85ea04ff8faff29282c62cb9bc67 *inst/extdata/IGH_sequencing/IGH_MVQ95413A_BL.tsv
dad30bd5c68f156bc85f09c915191a7b *inst/extdata/TCRB_metadata.csv
f16c00e2250c45287e9a84bf19f7508e *inst/extdata/TCRB_sequencing/TRB_CD4_949.tsv
6b80d3a2d06c7928f3e4b732c181ef47 *inst/extdata/TCRB_sequencing/TRB_CD8_949.tsv
68411df22f08874fc8fa5d11b1106e4d *inst/extdata/TCRB_sequencing/TRB_CD8_CMV_369.tsv
e3722aa948d6322d9e165be021ece194 *inst/extdata/TCRB_sequencing/TRB_Unsorted_0.tsv
da66dfb631ce830b925807d226a1401f *inst/extdata/TCRB_sequencing/TRB_Unsorted_1320.tsv
e8eb24f161a6c64e2f337321327eb518 *inst/extdata/TCRB_sequencing/TRB_Unsorted_1496.tsv
11b069821fdc16f8c33fce7dee8e4758 *inst/extdata/TCRB_sequencing/TRB_Unsorted_32.tsv
f591f25424dbb67ae472ee2de6a97ca7 *inst/extdata/TCRB_sequencing/TRB_Unsorted_369.tsv
ca3eb04967ec1093f62a143abe7c2748 *inst/extdata/TCRB_sequencing/TRB_Unsorted_83.tsv
718f2cf027e78971288940da8b1da46e *inst/extdata/TCRB_sequencing/TRB_Unsorted_949.tsv
47b1ad8345ee6dbe7facd0cb372cc10b *man/alignSeq.Rd
4882ea49ef8a99dd692ee843e7057727 *man/bhattacharyyaCoefficient.Rd
52ed7af8c1d88d9cdcda44fa9dc1b881 *man/bhattacharyyaMatrix.Rd
0d954f7ebfe6bf3d192dc23e3150648c *man/chordDiagramVDJ.Rd
df24309b1c28dfd24171880fc7c2b04b *man/clonalRelatedness.Rd
55718492b1fc76654c08ccb14a3e72f8 *man/clonality.Rd
2e62029581dad0e7958f625c5a348ee2 *man/cloneTrack.Rd
7737f1c2146e146aa967791102a62441 *man/commonSeqs.Rd
4a987cf3dcca73912f08bb9df2e6b0ba *man/commonSeqsBar.Rd
75f87721a423082809a563cca9a31715 *man/commonSeqsPlot.Rd
ced0d61007981c8b9a927330d194cd51 *man/commonSeqsVenn.Rd
7ce25154b4b4dc77bebdf908e4f242c1 *man/differentialAbundance.Rd
e6025302269b707065e69fd71c62ba45 *man/exportFasta.Rd
1aa56e3a4e47556424b4041232524b23 *man/geneFreq.Rd
8663fdb40276d0d1c020f3446d9a5a83 *man/lorenzCurve.Rd
8652f288d7b2e5e8c54221abcae5549e *man/mergeFiles.Rd
b8f3a8fdd106202c94a9f12b20e0c31f *man/pairwisePlot.Rd
d7b037d9a41e6d59364a4198d17d4c29 *man/phyloTree.Rd
396f569649928d73f40e03b5cbf4e54b *man/productive.Rd
aa6e9997d784999ee1c876486368d405 *man/productiveSeq.Rd
02a8a8e3abc3353a924ce3db9537d5c9 *man/readImmunoSeq.Rd
78e1ea629e90db5879035bceb9503142 *man/removeSeq.Rd
c5521df83a82d8efbe911cd8feef05f9 *man/searchPublished.Rd
ded558a199b558f5d03c68d08fc5ee20 *man/searchSeq.Rd
c6cb447fc16b28a9c312d88aeb61a10e *man/seqMatrix.Rd
6714d88d54e7abf786284ee10d481011 *man/similarityMatrix.Rd
83b7f1b0d83d04bee839310a96f0edf9 *man/similarityScore.Rd
a1c379aec551263f8e1e3a9446f3af73 *man/topFreq.Rd
418270d58b29c7c6732b6c96e02dc421 *man/topSeqs.Rd
d26590c2f559f97da47ee9fac3b625f5 *man/topSeqsPlot.Rd
fb9576859f30fd62214baf0a758dbf10 *man/uniqueSeqs.Rd
2b2006448020aad276f58300732eedfa *vignettes/LymphoSeq.Rmd
