854f20a6b32ae8c62bc53f22626f93b4 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
72689ce3fab92cf8f2fb5d5bb6132e11 *NAMESPACE
ab101a384c2d87899737471f6da4b814 *NEWS
d39eaf7dc92cfee17d4ce6257c1a3c3e *R/ABneutral.R
d90a74412c1bd07d0f57c3e8b8eaa9c3 *R/ABneutralSOMA.R
21e92d86b94d68fd4bf2964accc78292 *R/ABnull.R
95b358352e83db74dc5fea1f71022215 *R/ABplot.R
aa5c38aec0bcc6f30a8e7c881b2ec981 *R/ABselectMM.R
4559f48737a406eb6a7b4f9e9973b707 *R/ABselectMMSOMA.R
88f81ae9eee65271941cc0e4320108cd *R/ABselectUU.R
594920d3e9ed17ffd23fe5a4650f831f *R/ABselectUUSOMA.R
daafcc668577865b4b9c213b707dc065 *R/BOOTmodel.R
13b2b40e47bf7a82b1b85cab9f837da0 *R/D-matrices.R
832dfcbde1ca5db3812cc12e13d0c5c7 *R/FtestRSS.R
bf771d678d9242486755935f6c9aab36 *R/buildPedigree.R
61514633e301dc44041ecb55b5c5b964 *R/checkFun.R
7c7795abf01ef7243d3a84e7c003d297 *R/convertDMATRIX.R
7821a4d29c03d58b4cfb02256179f530 *R/dataRead.R
5a722c7245e51901a7a0a9af8253ded2 *R/plotPedigree.R
c9b9d9ecacd54d5e4f367e8cc690c96f *R/rcMethlvl.R
cc57100a7b819ac00d9d525d11af8be0 *R/time.R
62412bc06400c36f5de33276d59f00d4 *README.md
25288cca372a3d0655ffd739e97fd053 *build/vignette.rds
6d7424a3004813d1b9b0d33e64136357 *inst/doc/AlphaBeta.R
5a82ff0a90f01fd3a784831d7129bcba *inst/doc/AlphaBeta.Rmd
95f10e7733948799a28f821d7bc5da59 *inst/doc/AlphaBeta.pdf
d01b632889c6188e45d914a99f3aed6f *inst/extdata/data/G0.txt
c70d53c614181cfa3cdcbfd0092a7181 *inst/extdata/data/G1_2.txt
0afc570094b4c48f39bafb7dc953cc8a *inst/extdata/data/G4_2.txt
a1a96a48ebe69e9e8513cbea9910f1c6 *inst/extdata/data/G4_8.txt
80a4d3fc5df9bf1749c2fbdfcda8827f *inst/extdata/dm/Col_CG_global_estimates_ABneutral.Rdata
c68cc211fb2db6373bacde6be9ccceed *inst/extdata/dm/edgelist.fn
8ff7c914d3f0b19ece683511960eb738 *inst/extdata/dm/nodelist.fn
efde79ee262d0e67f9a75dc9ff215c79 *inst/extdata/dm/output.rds
5f03f45d000ead0499f21c1b6ce988ad *inst/extdata/dm/tmp_nodelist.fn
13bebd08d16010ce367766539d3bd287 *inst/extdata/models/ABneutralSOMA_CG_Boot_global_estimates.Rdata
bcbdaf8203c089bb9cca2324c889549c *inst/extdata/models/ABneutralSOMA_CG_global_estimates.Rdata
67789afe987e6c82a85041cd30a20086 *inst/extdata/models/ABneutral_Boot_CG_global_estimates.Rdata
895c7f8cd39b4fe894bed15357e2cb5d *inst/extdata/models/ABneutral_CG_global_estimates.Rdata
3e9de458fac40e26f7e113bd59bbe862 *inst/extdata/models/ABnull_CG_global_estimates.Rdata
24d9c5ba2b963d8b34a5d7fb743af0af *inst/extdata/models/ABselectMMSOMA_CG_global_estimates.Rdata
95b1ccd8ff8d9186e70108a81dcdcaa2 *inst/extdata/models/ABselectMM_CG_global_estimates.Rdata
85b7202200bba9040be06b7bf4933125 *inst/extdata/models/ABselectUUSOMA_CG_global_estimates.Rdata
3904f0955b11c0e2299b42cc83547013 *inst/extdata/models/ABselectUU_CG_global_estimates.Rdata
e9d5a9963975bf834326d0056b4e59f2 *inst/extdata/soma/SOMA_edgelist1.fn
415e1543ee5a9a9fd38de63fb43b1c14 *inst/extdata/soma/SOMA_edgelist2.fn
3dca04dea642176b29feae08cab7aae2 *inst/extdata/soma/SOMA_nodelist1.fn
65dfdd84b5cfe7439a7ba97e56100c1b *inst/extdata/soma/SOMA_nodelist2.fn
b0f5291d8fa1ee3cc2080005ed3cdb15 *inst/extdata/soma/outputSoma.rds
41c435807357c9df9a6dd3a773fd7112 *inst/extdata/vg/ABneutralSOMA.pdf
6b9714c2d4a016c5ef410a04628fe6eb *inst/extdata/vg/ABneutral_MA1_1.pdf
2330b6d11eb18cfa0a3bf910b41048bb *inst/extdata/vg/Figure1.png
5ee2626ce27a5523b650035d3fd51a1f *inst/extdata/vg/Figure2.pdf
ddb4d32a18d3020ec5c5810f6f0b94bd *inst/extdata/vg/MA1_1.pdf
10b9be36cc32f462bd6ee3a6b607d371 *inst/extdata/vg/MA1_2.pdf
00dd60943582975f7f61e574d8547741 *inst/extdata/vg/MA1_3.pdf
55f427933e195fd7eb18062994dcf3b2 *inst/extdata/vg/MA2_3.pdf
a11691c46514f73aaee5e03c7c8c4da8 *inst/extdata/vg/MA3.pdf
e08b4181c2348690e658db3713c3a36c *inst/extdata/vg/MAlines.png
3ffa7cee26a46bfabccf7d9ab331d708 *inst/extdata/vg/SOMA1.pdf
f89a528bd46d726dee6fbd7536ba5cde *inst/extdata/vg/SOMA2.pdf
68813feef671594d93392f69d7745325 *inst/extdata/vg/Trees.png
22b1b9a8eee5c92fdb7b5214f2f8f8be *inst/extdata/vg/edgelist.fn
96471c6200c5fdf2e35a299f8f268390 *inst/extdata/vg/edgelist_MA2_3.fn
2864e50a6c12ed46eee46b3c9de9b545 *inst/extdata/vg/edgelist_MA3.fn
0ae8caa1ef3c0ad6a199d6bbf4880048 *inst/extdata/vg/methylome-sample-region.png
1a772cd52984fcacfdb884b9725468be *inst/extdata/vg/methylome-sample.png
4082d6d7ee7b69de0549cc186b168d49 *inst/extdata/vg/nodelist.fn
60681ed74e1124da556c1bd035ddb62c *inst/extdata/vg/nodelist_MA2_3.fn
6e6be6b6f0e46042e46cab1b78dd5e68 *inst/extdata/vg/nodelist_MA3.fn
d83d4ca94baca2b2114e4ff946ccb67f *man/ABneutral.Rd
6daed5d33a60712ac2e81184de74173e *man/ABneutralSOMA.Rd
26b75664ad60570947ff30dfc70e8ca1 *man/ABnull.Rd
8d067ea8030a35095e79d1cd97a22038 *man/ABplot.Rd
e48465cc6db24ce6dd2e2792be277322 *man/ABselectMM.Rd
a4a93506d57c1ad9df48568f2f9afa5a *man/ABselectMMSOMA.Rd
453bada11f86f0de29ddb5833141dce8 *man/ABselectUU.Rd
31e8b3b59ba9af20ad33dacc7b0afdd7 *man/ABselectUUSOMA.Rd
256a7c38b3a61608c2ceb486e0958dac *man/BOOTmodel.Rd
cace198c426d3deb1dca7ebd3fb66ff7 *man/FtestRSS.Rd
c7ccb8033f093981214528e2b1cc2e1e *man/buildPedigree.Rd
873945c6930fd401319df957849a9522 *man/dMatrix.Rd
66dabb6a1a01cb54a4f99280f218e9a7 *man/plotPedigree.Rd
fef8c0b97f52407d0b3ee0ef94df0056 *man/rc.meth.lvl.Rd
5a82ff0a90f01fd3a784831d7129bcba *vignettes/AlphaBeta.Rmd
2dd907f623d5f1f0734aec5d7184b299 *vignettes/alphabeta.png
