e292c62080782c209b3bda603bf0b748 *DESCRIPTION
d86c7388e71dbbf816b9b5ec9b90c033 *NAMESPACE
31f68518c5d01ba89b2011c09736024b *NEWS.md
3c5910e155ea7ea00a1e023ec859faae *R/ATACseqTFEA.R
6c1ce965a56abc990e23595ad466a2bb *R/AllClasses.R
e43e557c03bc44aa675d9fbb18811a00 *R/AllGenerics.R
3bcfac1e7ab1cbbb246081680de7f6be *R/DBscore.R
39f93cfe9637a308992742914b7f222a *R/TFEA.R
ce9329204a60a32ed1de4ab887aa54e1 *R/calWeights.R
68593097d575cff4da354c0bd89914b8 *R/count5ends.R
21677506d1ec99afc2ae01d1eca04aaa *R/countsNormalization.R
3a78b29b874fbb279016fce7d0830f6e *R/doTFEA.R
6056c35cb468b91e335b9428579a4ad7 *R/eventsFilter.R
e9dad24db24fe22692d1eddc081f5029 *R/expandBindingSites.R
da36d5df0f3eca326f6349d11f61afb3 *R/extdata.R
63a6e219d56537a9e1ff6366075977ce *R/getWeightedBindingScore.R
341cbd86f1970cb0e41501435f14b95d *R/importFimoBindingSites.R
c8040cd821b7f7c3a926a54a21e292dd *R/internal-utils.R
e185c0a6bd8f540945fd255e7914a9cf *R/methods-TFEAresults.R
14ff10311a41097753a1fbf6e047341a *R/plotES.R
b9e76bebbd880d1703a0cb4efba9a00b *R/prepareBindingSites.R
62ae04f5ee516286dcfd307f097d4316 *R/volcanoplot.R
be40b217f88f019962b2ecfc6fb85d57 *README.md
af1980b1956f55c175e96ade37605157 *build/vignette.rds
78c907d92a72471b101638c2330e1bfa *inst/doc/ATACseqTFEA.R
c3e8f8a52fc77eed96595657a015c519 *inst/doc/ATACseqTFEA.Rmd
df5461009b99e7a14e98bb91ebb89711 *inst/doc/ATACseqTFEA.html
71f816baf1a39c01449b431baa8f1613 *inst/extdata/KD.shift.rep1.bam
0f0235bbfa27a049d0d5b4665e9e9df3 *inst/extdata/KD.shift.rep1.bam.bai
e68ea1dc48ddd0f4dae86f99f8d96613 *inst/extdata/KD.shift.rep2.bam
f10071b0e7b2ed25824f95d68331b836 *inst/extdata/KD.shift.rep2.bam.bai
9a8691ca0a60e3d182035f06ee9e8c9d *inst/extdata/PWMatrixList.rds
5b9f34df0eedc6a5c3d3d4d408f6b67a *inst/extdata/README.md
99e8489cf3a77edcb4ab5f9668e2368a *inst/extdata/WT.shift.rep1.bam
431645e3e253d987ff145cb41f20675f *inst/extdata/WT.shift.rep1.bam.bai
5b66ad3278c2d3c953d93e932331a6c3 *inst/extdata/WT.shift.rep2.bam
38485b89e673c99a627bdaddba50f755 *inst/extdata/WT.shift.rep2.bam.bai
2cbda53b1b1f7caf1c93a28976b6b392 *inst/extdata/best_curated_Human.rds
b9690e1c3e5da18b1df02dc924209cf3 *inst/extdata/bindingSites.rds
169ceb2adc91b017cc98cd13112d5621 *inst/extdata/cluster_PWMs.rds
4e5256de49e23ece9b99a1e80b96670d *inst/extdata/fimo1.gff
d1c8aedd3c971b83e8db353926a6e27f *inst/extdata/fimo2.gff
33d0783534ac14b3c8e91300a40c6603 *inst/extdata/res.rds
b5e37d85f911e6bf49f7a946829b4fc0 *inst/extdata/sample_scripts.R
c0b5aae2556d20896f15ec25368b2462 *man/ATACseqTFEA-package.Rd
a92d473b7e0949dbd7ebcda39c24096f *man/DBscore.Rd
4c0469f435d6475ceab3ec1887cccb1e *man/ESvolcanoplot.Rd
8d62f5d12f54a23e9ed79a25562526b3 *man/TFEA.Rd
9db04c9086156e645f6942ebd66ebb1c *man/TFEAresults-class.Rd
1a8fdea9274e6290047bbeed93343214 *man/TFEAresults-methods.Rd
c0a91c45ee72e83c774ec5f436e2de74 *man/calWeights.Rd
77d1b6a8e1dfdc876b41ad3c9315d706 *man/count5ends.Rd
a741c65a67d935384fcf770ade188d14 *man/countsNormalization.Rd
17a06a37bca517f36d203fb4efed8478 *man/doTFEA.Rd
a55afd3ec5472e2d93408f3cc7fb98cf *man/eventsFilter.Rd
737e81f1ab2c24ffae48c214a094db68 *man/expandBindingSites.Rd
86a5b497822b75591d569d192b30ec9e *man/extdata.Rd
002d1277ab903a40f7dbf4cba39dd3dd *man/getWeightedBindingScore.Rd
8ea7525c4e5ddb368d1a2cb7a1830a59 *man/importFimoBindingSites.Rd
ae1376258ea70ec491bb1aeeaa3fb1f5 *man/plotES.Rd
14749bcd336378686f72acb2ed1d2631 *man/prepareBindingSites.Rd
fc51eb95bf243efb1c22cb44b82040a9 *man/reduceByPercentage.Rd
9857b37c91a07960f69c9aa0075461b7 *tests/runTests.R
75621d0a2fac8fa3a2eb87df3058e0e9 *tests/testthat/test_TFEA.R
467e12f3c8a2967a20e2205ecf71010c *tests/testthat/test_eventsFilter.R
a9089296e39d7e28b7783e89942f7a8e *tests/testthat/test_expandBindingSites.R
35aba7dd4188690ffb3178b67897a6ce *tests/testthat/test_prepareBindingSites.R
c3e8f8a52fc77eed96595657a015c519 *vignettes/ATACseqTFEA.Rmd
a33e8e62075e816e1ba8b293cc947c6c *vignettes/ATACseqTFEA.png
62fc00c612131fd81c2f3a4de8e44032 *vignettes/bibliography.bib
2fcaf97a783a254afac21cc1d2e44b8c *vignettes/nature.csl
