2263cc348311bfc9204205e43dd77915 *DESCRIPTION
6260f81b256f2a31384c9474d0f844f9 *NAMESPACE
44e8e0f7148aa9cc0cbb0bd93632dc1c *NEWS.md
06439eb575005ebfde2961ccd2444430 *R/ATACseqQC.R
5c3d269a88f8702113ec646a723c4ff3 *R/NFRscore.R
c83528d8401fca12775ef0cb893d5c2a *R/PTscore.R
fbf60653435c8d0b639ff87057ed7a2d *R/TSSEscore.R
25d11ffdc880ee284f5890b4d5555299 *R/bamQC.R
0ddee560383b420c0d2314e132992cdb *R/distanceDyad.R
3ae9893dd83065b8838da54399db7475 *R/enrichedFragments.R
b2dc5439d44a2cc2f4d461617312cf6c *R/estimateLibComplexity.R
bfbf98e545b3a302b2cd50c0ec24da6c *R/factorFootprints.R
a87f3ba07983b50435c7b419158050dc *R/footprintsScanner.R
2c980719a4dbdb9e9ac38761147597dc *R/fragSizeDist.R
ac3ed17fa05b0b75ff8c5dcf038a975d *R/peakDet.R
366eb039dc33a2a511a5f4464c8d272d *R/plotCorrelation.R
f4f63965589d155a0c5da00051fbc97d *R/plotFootprints.R
ad2958a5cae7a6ae7d5800bb7635ea01 *R/pseudoPausingIndex.R
bfd517762de692bb802ab419aed547d9 *R/pwmscores.R
efdcc5f8535e296d4c449ebd9a7d1824 *R/readBamFile.R
1d9cd0630a0b3224ad3caeadf0f25992 *R/readsDupFreq.R
24acdc126615ce88682ed830c277c154 *R/saturationPlot.R
6445fba1caac3c25801ca7bb31ed50bf *R/shiftGAlignments.R
bee102e91db1a80db4d845a8ee41ed2f *R/shiftGAlignmentsList.R
836a87b645067e06db1b223f8a13a84d *R/shiftReads.R
3cd51153f32336f5fc72f472471d61d2 *R/splitBam.R
1da031673f7d52a85572fc11547de81a *R/splitGAlignmentsByCut.R
e0f0d166ec5e6883b573cba89f85b7fb *R/vPlot.R
191a7a2caaadb47e89a5f02608d61f01 *R/writeListOfGAlignments.R
315e18f3c16adb1d3bb3769f7c276e94 *README.md
156b2272eb25cfde83923f0c3e1e03e7 *build/vignette.rds
482f2befe5e4bfdee107808cd6685f4a *inst/CITATION
088936219544f13f5ac7bc554408f979 *inst/doc/ATACseqQC.R
16770409a1b0c038356e5f6903ef5fb0 *inst/doc/ATACseqQC.Rmd
22930acb7171476f9b7b8a5eb1f08a4f *inst/doc/ATACseqQC.html
61c1ac3d3645067ba8ef21290ac16e8e *inst/extdata/GL1.bam
28880a591a5420120ef059b14838f09a *inst/extdata/GL1.bam.bai
8a075602a2c5d224efe47c930e88db9e *inst/extdata/GL2.bam
82aa5889ab37463b77442f6a09e9c423 *inst/extdata/GL2.bam.bai
b0e1ddeb52cc42b26741e3e53c2036d0 *inst/extdata/GL3.bam
2a77ccad0ccfe5cf33888b7b41106137 *inst/extdata/GL3.bam.bai
9d20f170aa0f2ee7a365a146f4530378 *inst/extdata/GL4.bam
0d6e3518d6dc874c5d3caf7e580a02dd *inst/extdata/GL4.bam.bai
3395548aa4b18ffb3deb909b87d0c942 *inst/extdata/IGVSnapshot.R
6af26c7f95517300fdb83dd7bedceb9c *inst/extdata/jolma2013.motifs.bindingList.95.rds
74fd53a69f45ffef222ccfae9619b124 *inst/extdata/splited/NucleosomeFree.bam
1739024a1daf0e650cd81b2f40d10da1 *inst/extdata/splited/NucleosomeFree.bam.bai
b07196a6fc3f880800669432a7da44c3 *inst/extdata/splited/dinucleosome.bam
7b1483fe5551e09dec0b88438f36145f *inst/extdata/splited/dinucleosome.bam.bai
e8e75cfa55785d594c597ffd32005875 *inst/extdata/splited/mononucleosome.bam
5b27ef14b0672839be4df6aeab2fdcb3 *inst/extdata/splited/mononucleosome.bam.bai
cc72fe0d4076b39f3f6addf991ffa633 *inst/extdata/splited/trinucleosome.bam
8daa65759c7e17be01165dc2535eae2c *inst/extdata/splited/trinucleosome.bam.bai
e3b316b74ac84969a781b8d9934f487f *man/ATACseqQC-package.Rd
2306e99c3319c41599cd8faf5299b8d3 *man/DB.Rd
44696f0e5e546803406490dcb904ce83 *man/NFRscore.Rd
90b9b09115082a2269fb89123149f016 *man/PTscore.Rd
5e99f7e7c7dbf5f81bae1fe3ea777985 *man/TSSEscore.Rd
2cec54a84b3e97b9dee1108c671f61ac *man/bamQC.Rd
dfe5d27fc203edc1cbfc02711656ab99 *man/distanceDyad.Rd
223b3d243dfe43a48646d3feea5cc4cd *man/enrichedFragments.Rd
e6d4b53c978759b52553f5744013693a *man/estimateLibComplexity.Rd
a121833f516283d22972093db1efd794 *man/factorFootprints.Rd
f2015f0e8c4a6ae43414e1101ced6673 *man/footprintsScanner.Rd
5d6f81f532cff1923a6d063cb633ea60 *man/fragSizeDist.Rd
9e23e4f90e45450913a017952fcef180 *man/peakdet.Rd
b38ec814533b76af3f02adb68638828c *man/plotCorrelation.Rd
67d0e31e85fd7fff3c8ef7e8212a95a9 *man/plotFootprints.Rd
ad950c09678dd557f91bc4e8b332e71d *man/pseudoPausingIndex.Rd
57b5e49a78f2453d91613639d7092b71 *man/pwmscores.Rd
0d81aed95659a53549185e1d37fcee6d *man/readBamFile.Rd
691893ea3051163978f445acc15a50eb *man/readsDupFreq.Rd
633215f4eebdd3802284c6c972813beb *man/saturationPlot.Rd
9a074b31fff7831d8050bee61cead70b *man/shiftGAlignments.Rd
f51e6d4adeba518c9c67978990c2b501 *man/shiftGAlignmentsList.Rd
40aa325dc471ee256f1b0e8ead692140 *man/shiftReads.Rd
70b44d6ec2af7af333440b6a7b76ea75 *man/splitBam.Rd
4f517fe9fc128a313de854f7d6c468ef *man/splitGAlignmentsByCut.Rd
27a0e07ef96d45d212dbf15a8eca69b9 *man/vPlot.Rd
641a2949dcdc2664819a53d8e696473a *man/writeListOfGAlignments.Rd
76a7eb2bd903b9a00fc4e8b54cf1f1cc *tests/runTests.R
0d6d2dd1ea373dd7b3ef08e3612096b7 *tests/testthat/test_bamQC.R
992256ba34f8ca660497e58a76f2ed63 *tests/testthat/test_factorFootprints.R
95d2432281e70fe00fea695f2e73c577 *tests/testthat/test_fragSizeDist.R
184933bf4b5ef414c3a3daff54ffd3de *tests/testthat/test_shiftGAlignmentsList.R
09fff1fa3d2ea9b6333fe0bfd953884f *tests/testthat/test_shiftReads.R
faad95287c5efea05dcd9497dc8bfe74 *tests/testthat/test_splitGAlignmentsByCut.R
16770409a1b0c038356e5f6903ef5fb0 *vignettes/ATACseqQC.Rmd
dc49407bb9f42879571d689cd7bf41a7 *vignettes/CTCFfootprints.png
721c86c79f58b7f2a3c320152712a2f7 *vignettes/CTCFvPlot.png
34fbca82018c6228a3ac8f46fd1e5a61 *vignettes/bibliography.bib
2fcaf97a783a254afac21cc1d2e44b8c *vignettes/nature.csl
