Index of /packages/3.22/bioc/src/contrib
Name Last modified Size Description
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PACKAGES.rds 2025-11-15 18:21 159K
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PACKAGES.gz 2025-11-15 18:21 214K
PACKAGES 2025-11-15 18:21 856K
RNAdecay_1.30.0.tar.gz 2025-11-15 18:15 2.7M
OSTA.data_1.2.0.tar.gz 2025-11-15 18:15 703K
lefser_1.20.2.tar.gz 2025-11-15 18:15 602K
tidybulk_2.0.1.tar.gz 2025-11-14 18:15 4.7M
plyranges_1.30.1.tar.gz 2025-11-14 18:15 1.3M
DESeq2_1.50.2.tar.gz 2025-11-14 18:15 2.6M
amplican_1.32.1.tar.gz 2025-11-14 18:15 9.8M
pmp_1.22.1.tar.gz 2025-11-12 18:15 4.9M
epiregulon_2.0.1.tar.gz 2025-11-12 18:15 1.2M
enrichplot_1.30.2.tar.gz 2025-11-12 18:15 98K
tidySummarizedExperiment_1.20.1.tar.gz 2025-11-11 18:15 396K
tidySpatialExperiment_1.6.1.tar.gz 2025-11-11 18:15 4.3M
tidySingleCellExperiment_1.20.1.tar.gz 2025-11-11 18:15 1.1M
SingleCellSignalR_2.0.1.tar.gz 2025-11-10 18:58 175K
plyxp_1.4.3.tar.gz 2025-11-10 18:58 1.2M
ngsReports_2.12.1.tar.gz 2025-11-10 18:58 3.2M
GenomicDataCommons_1.34.1.tar.gz 2025-11-10 18:58 2.7M
gatom_1.8.2.tar.gz 2025-11-10 18:58 1.6M
cBioPortalData_2.22.1.tar.gz 2025-11-10 18:58 1.0M
BulkSignalR_1.2.1.tar.gz 2025-11-10 18:58 3.0M
tximport_1.38.1.tar.gz 2025-11-07 18:15 311K
destiny_3.24.0.tar.gz 2025-11-07 18:15 880K
dandelionR_1.2.0.tar.gz 2025-11-07 18:15 11M
rGREAT_2.12.1.tar.gz 2025-11-06 18:15 2.8M
GSVA_2.4.1.tar.gz 2025-11-06 18:15 3.2M
SpatialFeatureExperiment_1.12.1.tar.gz 2025-11-05 18:58 1.8M
PhyloProfile_2.2.1.tar.gz 2025-11-05 18:58 1.4M
MsBackendMetaboLights_1.4.2.tar.gz 2025-11-05 18:58 311K
densvis_1.20.1.tar.gz 2025-11-05 18:58 1.7M
ChIPseeker_1.46.1.tar.gz 2025-11-05 18:58 7.3M
CatsCradle_1.4.1.tar.gz 2025-11-05 18:58 6.8M
SVP_1.2.1.tar.gz 2025-11-04 18:15 4.2M
MsBackendSql_1.10.1.tar.gz 2025-11-04 18:15 349K
eisaR_1.22.1.tar.gz 2025-11-04 18:15 1.9M
SplicingGraphs_1.50.1.tar.gz 2025-11-03 18:15 4.5M
clusterProfiler_4.18.1.tar.gz 2025-11-03 18:15 614K
SparseArray_1.10.1.tar.gz 2025-11-01 17:15 465K
phantasus_1.30.0.tar.gz 2025-11-01 17:15 9.5M
FLAMES_2.4.1.tar.gz 2025-11-01 17:15 4.1M
escape_2.6.1.tar.gz 2025-11-01 17:15 1.6M
dmGsea_1.0.1.tar.gz 2025-11-01 17:15 2.0M
DESpace_2.2.1.tar.gz 2025-11-01 17:15 6.9M
CBN2Path_1.0.0.tar.gz 2025-11-01 17:15 2.3M
universalmotif_1.28.0.tar.gz 2025-10-31 17:15 3.5M
TreeSummarizedExperiment_2.18.0.tar.gz 2025-10-31 17:15 1.1M
treekoR_1.18.0.tar.gz 2025-10-31 17:15 1.7M
treeio_1.34.0.tar.gz 2025-10-31 17:15 685K
treeclimbR_1.6.0.tar.gz 2025-10-31 17:15 682K
TCGAbiolinks_2.38.0.tar.gz 2025-10-31 17:15 64M
tanggle_1.16.0.tar.gz 2025-10-31 17:15 2.1M
systemPipeTools_1.18.0.tar.gz 2025-10-31 17:15 1.0M
syntenet_1.12.0.tar.gz 2025-10-31 17:15 3.0M
spoon_1.6.0.tar.gz 2025-10-31 17:15 462K
SplineDV_1.2.0.tar.gz 2025-10-31 17:15 2.4M
SpliceWiz_1.12.0.tar.gz 2025-10-31 17:15 4.8M
Spectra_1.20.0.tar.gz 2025-10-31 17:15 1.8M
sitePath_1.26.0.tar.gz 2025-10-31 17:15 1.2M
scuttle_1.20.0.tar.gz 2025-10-31 17:15 1.0M
scDotPlot_1.4.0.tar.gz 2025-10-31 17:15 1.9M
scBubbletree_1.12.0.tar.gz 2025-10-31 17:15 4.6M
SCANVIS_1.24.0.tar.gz 2025-10-31 17:15 472K
ReactomeGSA_1.24.0.tar.gz 2025-10-31 17:15 379K
philr_1.36.0.tar.gz 2025-10-31 17:15 534K
orthogene_1.16.0.tar.gz 2025-10-31 17:15 2.6M
OmaDB_2.26.0.tar.gz 2025-10-31 17:15 101K
myvariant_1.40.0.tar.gz 2025-10-31 17:15 159K
mitology_1.2.0.tar.gz 2025-10-31 17:15 4.1M
miQC_1.18.0.tar.gz 2025-10-31 17:15 2.8M
MicrobiotaProcess_1.22.0.tar.gz 2025-10-31 17:15 4.8M
miaViz_1.18.0.tar.gz 2025-10-31 17:15 3.7M
MetaboDynamics_2.0.0.tar.gz 2025-10-31 17:15 7.2M
LymphoSeq_1.38.0.tar.gz 2025-10-31 17:15 2.2M
iSEEtree_1.4.0.tar.gz 2025-10-31 17:15 7.5M
Ibex_1.0.0.tar.gz 2025-10-31 17:15 4.0M
hmdbQuery_1.30.0.tar.gz 2025-10-31 17:15 750K
ggtreeSpace_1.6.0.tar.gz 2025-10-31 17:15 533K
ggtreeExtra_1.20.0.tar.gz 2025-10-31 17:15 528K
ggtreeDendro_1.12.0.tar.gz 2025-10-31 17:15 426K
ggtree_4.0.1.tar.gz 2025-10-31 17:15 362K
GDCRNATools_1.30.0.tar.gz 2025-10-31 17:15 5.3M
flowGraph_1.18.0.tar.gz 2025-10-31 17:15 2.2M
fastreeR_2.0.0.tar.gz 2025-10-31 17:15 3.7M
DspikeIn_1.0.0.tar.gz 2025-10-31 17:15 4.3M
crumblr_1.2.0.tar.gz 2025-10-31 17:15 1.8M
cogeqc_1.14.0.tar.gz 2025-10-31 17:15 3.2M
cellmig_1.0.0.tar.gz 2025-10-31 17:15 5.6M
cardelino_1.12.0.tar.gz 2025-10-31 17:15 3.6M
ASURAT_1.14.0.tar.gz 2025-10-31 17:15 1.6M
ZygosityPredictor_1.10.0.tar.gz 2025-10-30 17:47 827K
zitools_1.4.0.tar.gz 2025-10-30 17:47 253K
zinbwave_1.32.0.tar.gz 2025-10-30 17:47 490K
zFPKM_1.32.0.tar.gz 2025-10-30 17:47 148K
zenith_1.12.0.tar.gz 2025-10-30 17:47 667K
zellkonverter_1.20.0.tar.gz 2025-10-30 17:47 1.4M
yarn_1.36.0.tar.gz 2025-10-30 17:47 3.0M
YAPSA_1.36.0.tar.gz 2025-10-30 17:47 4.2M
yamss_1.36.0.tar.gz 2025-10-30 17:47 425K
XVector_0.50.0.tar.gz 2025-10-30 17:47 70K
xmapbridge_1.68.0.tar.gz 2025-10-30 17:47 3.0M
XINA_1.28.0.tar.gz 2025-10-30 17:47 2.8M
Xeva_1.26.0.tar.gz 2025-10-30 17:47 1.6M
xenLite_1.4.0.tar.gz 2025-10-30 17:47 3.3M
XeniumIO_1.2.0.tar.gz 2025-10-30 17:47 230K
XDE_2.56.0.tar.gz 2025-10-30 17:47 1.3M
xcore_1.14.0.tar.gz 2025-10-30 17:47 2.4M
xcms_4.8.0.tar.gz 2025-10-30 17:47 9.1M
xCell2_1.2.0.tar.gz 2025-10-30 17:47 3.1M
XAItest_1.2.0.tar.gz 2025-10-30 17:47 1.3M
Wrench_1.28.0.tar.gz 2025-10-30 17:47 225K
wpm_1.20.0.tar.gz 2025-10-30 17:47 2.4M
wiggleplotr_1.34.0.tar.gz 2025-10-30 17:47 336K
widgetTools_1.88.0.tar.gz 2025-10-30 17:47 229K
weitrix_1.22.0.tar.gz 2025-10-30 17:47 9.5M
webbioc_1.82.0.tar.gz 2025-10-30 17:47 312K
wavClusteR_2.44.0.tar.gz 2025-10-30 17:47 782K
wateRmelon_2.16.0.tar.gz 2025-10-30 17:47 3.3M
waddR_1.24.0.tar.gz 2025-10-30 17:47 154K
vulcan_1.32.0.tar.gz 2025-10-30 17:47 392K
vtpnet_0.50.0.tar.gz 2025-10-30 17:47 20M
vsclust_1.12.0.tar.gz 2025-10-30 17:47 3.7M
VplotR_1.20.0.tar.gz 2025-10-30 17:47 5.2M
Voyager_1.12.0.tar.gz 2025-10-30 17:47 4.0M
vmrseq_1.2.0.tar.gz 2025-10-30 17:47 3.0M
vissE_1.18.0.tar.gz 2025-10-30 17:47 1.6M
visiumStitched_1.2.0.tar.gz 2025-10-30 17:47 3.2M
viper_1.44.0.tar.gz 2025-10-30 17:47 505K
vidger_1.30.0.tar.gz 2025-10-30 17:47 7.9M
velociraptor_1.20.0.tar.gz 2025-10-30 17:47 792K
VariantFiltering_1.46.0.tar.gz 2025-10-30 17:47 3.6M
VariantAnnotation_1.56.0.tar.gz 2025-10-30 17:47 2.0M
variancePartition_1.40.0.tar.gz 2025-10-30 17:47 4.7M
UCell_2.14.0.tar.gz 2025-10-30 17:47 2.3M
tximeta_1.28.0.tar.gz 2025-10-30 17:47 1.1M
tradeSeq_1.24.0.tar.gz 2025-10-30 17:47 5.2M
trackViewer_1.46.0.tar.gz 2025-10-30 17:47 11M
weaver_1.76.0.tar.gz 2025-10-30 17:16 233K
vsn_3.78.0.tar.gz 2025-10-30 17:16 1.9M
VisiumIO_1.6.0.tar.gz 2025-10-30 17:16 1.8M
ViSEAGO_1.24.0.tar.gz 2025-10-30 17:16 8.6M
VERSO_1.20.0.tar.gz 2025-10-30 17:16 678K
VennDetail_1.26.0.tar.gz 2025-10-30 17:16 835K
veloviz_1.16.0.tar.gz 2025-10-30 17:16 3.6M
VegaMC_3.48.0.tar.gz 2025-10-30 17:16 1.8M
VDJdive_1.12.0.tar.gz 2025-10-30 17:16 543K
VCFArray_1.26.0.tar.gz 2025-10-30 17:16 303K
vbmp_1.78.0.tar.gz 2025-10-30 17:16 1.8M
VaSP_1.22.0.tar.gz 2025-10-30 17:16 8.5M
VariantExperiment_1.24.0.tar.gz 2025-10-30 17:16 328K
VarCon_1.18.0.tar.gz 2025-10-30 17:16 1.9M
VanillaICE_1.72.0.tar.gz 2025-10-30 17:16 2.1M
VAExprs_1.16.0.tar.gz 2025-10-30 17:16 562K
uSORT_1.36.0.tar.gz 2025-10-30 17:16 2.8M
UPDhmm_1.6.0.tar.gz 2025-10-30 17:16 1.1M
updateObject_1.14.0.tar.gz 2025-10-30 17:16 1.3M
Uniquorn_2.30.0.tar.gz 2025-10-30 17:16 2.2M
UniProt.ws_2.50.0.tar.gz 2025-10-30 17:16 242K
unifiedWMWqPCR_1.46.0.tar.gz 2025-10-30 17:16 504K
UNDO_1.52.0.tar.gz 2025-10-30 17:16 2.9M
uncoverappLib_1.20.0.tar.gz 2025-10-30 17:16 3.4M
UMI4Cats_1.20.0.tar.gz 2025-10-30 17:16 3.8M
Ularcirc_1.28.0.tar.gz 2025-10-30 17:16 5.2M
UCSC.utils_1.6.0.tar.gz 2025-10-30 17:16 231K
txdbmaker_1.6.0.tar.gz 2025-10-30 17:16 1.0M
txcutr_1.16.0.tar.gz 2025-10-30 17:16 316K
twoddpcr_1.34.0.tar.gz 2025-10-30 17:16 3.8M
twilight_1.86.0.tar.gz 2025-10-30 17:16 1.2M
tweeDEseq_1.56.0.tar.gz 2025-10-30 17:16 236K
TVTB_1.36.0.tar.gz 2025-10-30 17:16 1.5M
TurboNorm_1.58.0.tar.gz 2025-10-30 17:16 2.0M
TTMap_1.32.0.tar.gz 2025-10-30 17:16 1.6M
ttgsea_1.18.0.tar.gz 2025-10-30 17:16 332K
TSCAN_1.48.0.tar.gz 2025-10-30 17:16 2.7M
TSAR_1.8.0.tar.gz 2025-10-30 17:16 3.9M
TRONCO_2.42.0.tar.gz 2025-10-30 17:16 4.2M
tRNAscanImport_1.30.0.tar.gz 2025-10-30 17:16 849K
tRNAdbImport_1.28.0.tar.gz 2025-10-30 17:16 323K
tRNA_1.28.0.tar.gz 2025-10-30 17:16 1.2M
tripr_1.16.0.tar.gz 2025-10-30 17:16 2.9M
triplex_1.50.0.tar.gz 2025-10-30 17:16 602K
trio_3.48.0.tar.gz 2025-10-30 17:16 756K
TrIdent_1.2.0.tar.gz 2025-10-30 17:16 1.6M
tricycle_1.18.0.tar.gz 2025-10-30 17:16 4.3M
TRESS_1.16.0.tar.gz 2025-10-30 17:16 487K
Trendy_1.32.0.tar.gz 2025-10-30 17:16 1.1M
TREG_1.14.0.tar.gz 2025-10-30 17:16 2.4M
TreeAndLeaf_1.22.0.tar.gz 2025-10-30 17:16 5.9M
traseR_1.40.0.tar.gz 2025-10-30 17:16 6.2M
transomics2cytoscape_1.20.0.tar.gz 2025-10-30 17:16 12M
transmogR_1.6.0.tar.gz 2025-10-30 17:16 585K
tRanslatome_1.48.0.tar.gz 2025-10-30 17:16 938K
transite_1.28.0.tar.gz 2025-10-30 17:16 640K
transformGamPoi_1.16.0.tar.gz 2025-10-30 17:16 787K
transcriptogramer_1.32.0.tar.gz 2025-10-30 17:16 3.6M
TrajectoryUtils_1.18.0.tar.gz 2025-10-30 17:16 338K
TrajectoryGeometry_1.18.0.tar.gz 2025-10-30 17:16 1.9M
tracktables_1.44.0.tar.gz 2025-10-30 17:16 357K
tpSVG_1.6.0.tar.gz 2025-10-30 17:16 1.2M
TPP2D_1.26.0.tar.gz 2025-10-30 17:16 2.3M
TPP_3.38.0.tar.gz 2025-10-30 17:16 8.4M
ToxicoGx_2.14.0.tar.gz 2025-10-30 17:16 3.9M
topGO_2.62.0.tar.gz 2025-10-30 17:16 2.4M
topdownr_1.32.0.tar.gz 2025-10-30 17:16 1.6M
topconfects_1.26.0.tar.gz 2025-10-30 17:16 3.6M
TOP_1.10.0.tar.gz 2025-10-30 17:16 491K
tomoseqr_1.14.0.tar.gz 2025-10-30 17:16 1.6M
tomoda_1.20.0.tar.gz 2025-10-30 17:16 2.9M
TOAST_1.24.0.tar.gz 2025-10-30 17:16 3.6M
TnT_1.32.0.tar.gz 2025-10-30 17:16 233K
TMSig_1.4.0.tar.gz 2025-10-30 17:16 3.9M
TMixClust_1.32.0.tar.gz 2025-10-30 17:16 510K
tLOH_1.18.0.tar.gz 2025-10-30 17:16 2.3M
tkWidgets_1.88.0.tar.gz 2025-10-30 17:16 479K
TissueEnrich_1.30.0.tar.gz 2025-10-30 17:16 3.7M
TIN_1.42.0.tar.gz 2025-10-30 17:16 4.6M
timescape_1.34.0.tar.gz 2025-10-30 17:16 674K
timeOmics_1.22.0.tar.gz 2025-10-30 17:16 4.0M
timecourse_1.82.0.tar.gz 2025-10-30 17:16 843K
tilingArray_1.88.0.tar.gz 2025-10-30 17:16 3.5M
TileDBArray_1.20.0.tar.gz 2025-10-30 17:16 306K
tigre_1.64.0.tar.gz 2025-10-30 17:16 320K
tidysbml_1.4.0.tar.gz 2025-10-30 17:16 307K
tidyomics_1.6.0.tar.gz 2025-10-30 17:16 57K
tidyFlowCore_1.4.0.tar.gz 2025-10-30 17:16 787K
tidyCoverage_1.6.0.tar.gz 2025-10-30 17:16 3.7M
TFutils_1.30.0.tar.gz 2025-10-30 17:16 6.0M
TFHAZ_1.32.0.tar.gz 2025-10-30 17:16 2.5M
TFEA.ChIP_1.30.0.tar.gz 2025-10-30 17:16 6.8M
TFBSTools_1.48.0.tar.gz 2025-10-30 17:16 586K
TFARM_1.32.0.tar.gz 2025-10-30 17:16 473K
terraTCGAdata_1.14.0.tar.gz 2025-10-30 17:16 235K
ternarynet_1.54.0.tar.gz 2025-10-30 17:16 272K
terapadog_1.2.0.tar.gz 2025-10-30 17:16 1.5M
TEQC_4.32.0.tar.gz 2025-10-30 17:16 646K
tenXplore_1.32.0.tar.gz 2025-10-30 17:16 2.4M
TENxIO_1.12.0.tar.gz 2025-10-30 17:16 259K
TENET_1.2.0.tar.gz 2025-10-30 17:16 1.8M
TEKRABber_1.14.0.tar.gz 2025-10-30 17:16 3.4M
TDbasedUFEadv_1.10.0.tar.gz 2025-10-30 17:16 3.8M
TDbasedUFE_1.10.0.tar.gz 2025-10-30 17:16 1.3M
TCseq_1.34.0.tar.gz 2025-10-30 17:16 1.1M
TCC_1.50.0.tar.gz 2025-10-30 17:16 3.2M
TBSignatureProfiler_1.22.0.tar.gz 2025-10-30 17:16 2.9M
TaxSEA_1.2.0.tar.gz 2025-10-30 17:16 351K
TargetSearch_2.12.0.tar.gz 2025-10-30 17:16 729K
TargetScore_1.48.0.tar.gz 2025-10-30 17:16 1.2M
TargetDecoy_1.16.0.tar.gz 2025-10-30 17:16 4.1M
target_1.24.0.tar.gz 2025-10-30 17:16 3.1M
TAPseq_1.22.0.tar.gz 2025-10-30 17:16 2.6M
TADCompare_1.20.0.tar.gz 2025-10-30 17:16 4.2M
tadar_1.8.0.tar.gz 2025-10-30 17:16 1.7M
systemPipeShiny_1.20.0.tar.gz 2025-10-30 17:16 4.3M
systemPipeR_2.16.0.tar.gz 2025-10-30 17:16 6.5M
SynMut_1.26.0.tar.gz 2025-10-30 17:16 106K
synlet_2.10.0.tar.gz 2025-10-30 17:16 1.5M
SynExtend_1.22.0.tar.gz 2025-10-30 17:16 3.1M
synergyfinder_3.18.0.tar.gz 2025-10-30 17:16 6.5M
synapsis_1.16.0.tar.gz 2025-10-30 17:16 3.4M
switchde_1.36.0.tar.gz 2025-10-30 17:16 1.0M
switchBox_1.46.0.tar.gz 2025-10-30 17:16 474K
swfdr_1.36.0.tar.gz 2025-10-30 17:16 1.2M
SwathXtend_2.32.0.tar.gz 2025-10-30 17:16 346M
SWATH2stats_1.40.0.tar.gz 2025-10-30 17:15 3.0M
SVMDO_1.10.0.tar.gz 2025-10-30 17:15 2.4M
svaNUMT_1.16.0.tar.gz 2025-10-30 17:15 815K
sva_3.58.0.tar.gz 2025-10-30 17:15 444K
survtype_1.26.0.tar.gz 2025-10-30 17:15 347K
survcomp_1.60.0.tar.gz 2025-10-30 17:15 642K
survClust_1.4.0.tar.gz 2025-10-30 17:15 814K
SurfR_1.6.0.tar.gz 2025-10-30 17:15 374K
surfaltr_1.16.0.tar.gz 2025-10-30 17:15 3.1M
supersigs_1.18.0.tar.gz 2025-10-30 17:15 2.6M
SuperCellCyto_1.0.0.tar.gz 2025-10-30 17:15 4.4M
Summix_2.16.0.tar.gz 2025-10-30 17:15 1.3M
SummarizedExperiment_1.40.0.tar.gz 2025-10-30 17:15 675K
SUITOR_1.12.0.tar.gz 2025-10-30 17:15 265K
subSeq_1.40.0.tar.gz 2025-10-30 17:15 2.9M
SubCellBarCode_1.26.0.tar.gz 2025-10-30 17:15 2.3M
StructuralVariantAnnotation_1.26.0.tar.gz 2025-10-30 17:15 1.0M
Structstrings_1.26.0.tar.gz 2025-10-30 17:15 376K
STRINGdb_2.22.0.tar.gz 2025-10-30 17:15 10M
Streamer_1.56.0.tar.gz 2025-10-30 17:15 136K
strandCheckR_1.28.0.tar.gz 2025-10-30 17:15 1.2M
stPipe_1.0.0.tar.gz 2025-10-30 17:15 5.8M
stJoincount_1.12.0.tar.gz 2025-10-30 17:15 2.7M
stepNorm_1.82.0.tar.gz 2025-10-30 17:15 461K
statTarget_1.40.0.tar.gz 2025-10-30 17:15 781K
Statial_1.12.0.tar.gz 2025-10-30 17:15 9.2M
STATegRa_1.46.0.tar.gz 2025-10-30 17:15 4.9M
standR_1.14.0.tar.gz 2025-10-30 17:15 2.4M
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STADyUM_1.0.0.tar.gz 2025-10-30 17:15 2.8M
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PAIRADISE_1.26.0.tar.gz 2025-10-30 17:15 322K
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PADOG_1.52.0.tar.gz 2025-10-30 17:15 370K
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OLINgui_1.84.0.tar.gz 2025-10-30 17:15 375K
OLIN_1.88.0.tar.gz 2025-10-30 17:15 2.6M
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oligo_1.74.0.tar.gz 2025-10-30 17:15 27M
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odseq_1.38.0.tar.gz 2025-10-30 17:15 230K
octad_1.12.0.tar.gz 2025-10-30 17:15 1.3M
OCplus_1.84.0.tar.gz 2025-10-30 17:15 9.6M
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NTW_1.60.0.tar.gz 2025-10-30 17:15 873K
npGSEA_1.46.0.tar.gz 2025-10-30 17:15 387K
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geneRxCluster_1.46.0.tar.gz 2025-10-30 17:15 281K
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gemma.R_3.6.0.tar.gz 2025-10-30 17:15 2.3M
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