Changes in version 1.1.90                        

  - Add options to generate violin plots instead of boxplots

  - Add support for Jenks natural breaks and custom grouping to
    step7TopGenesSurvival

  - Add support for custom regions and MotifDb filtering options to
    step7LinkedDNAMethylationSitesMotifSearching

  - step7TopGenesUserPeakOverlap now accepts peak names, generates
    results for each individual peak rather than each peak file, and
    accepts multiple input objects or directories

  - Fix TENETSavedSizePlot bug that caused warnings and failure to
    respect an explicitly specified size

  - Fix TENETCacheAllData to fail if any dataset does not exist on the
    hub

                        Changes in version 1.1.1                        

  - Merge survival bug fix from Bioconductor 3.21 release branch; see
    below

                        Changes in version 1.1.0                        

  - Release generated automatically by Bioconductor - no changes

                        Changes in version 1.0.1                        

  - Fix typo in survival calculation code which made the number of case
    samples with intermediate expression/methylation levels always 0

                        Changes in version 1.0.0                        

  - Initial Bioconductor release