Changes in version 1.11                         

PSMatch 1.11.5

  - Correct plotSpectraPTM annotations.

PSMatch 1.11.4

  - Added plotSpectraPTM: a plotting function to visualise
    post-translational modifications.

PSMatch 1.11.3

  - Deprecated addFragments. The use of labelFragments is endorsed
    instead. See PR #20.

PSMatch 1.11.2

  - Replace calculateFragments with calculateFragments2. See PR #19.

PSMatch 1.11.1

  - New calculateFragments2 function includes fixed and variable
    modifications to fragments ions. See PR #16.

PSMatch 1.11.0

  - New devel version

                         Changes in version 1.9                         

PSMatch 1.9.1

  - Fix check errors.

PSMatch 1.9.0

  - New Bioc devel.

                         Changes in version 1.7                         

PSMatch 1.7.2

  - Fix connected component dim names in show().

PSMatch 1.7.1

  - In addFragments() use ... to pass parameters to
    calculateFragments().

PSMatch 1.7.0

  - New Bioc devel.

                         Changes in version 1.5                         

PSMatch 1.5.0

  - New Bioc devel.

                         Changes in version 1.3                         

PSMatch 1.3.3

  - New fdr variable (default is always NA_character_ for now) that
    defines the spectrum FDR (or any similar/relevant metric that can be
    used for filtering - see next item).
  - New filterPsmFdr() function that filters based on the fdr variable.

PSMatch 1.3.2

  - Specific Matrix::rowSums() to fix error in example.

PSMatch 1.3.1

  - Fix type in vignette.

                         Changes in version 1.0                         

PSMatch 1.0.0

  - First Bioconductor release.

                        Changes in version 0.99                         

Changes in 0.99.5

  - Fix mz calculation in calculateFragments for neutral losses with a
    charge > 1 (ported from MSnbase - see issue 573).

Changes in 0.99.4

  - Set seed in the ConnectedComponents unit test to stop random errors
    after clustering.

Changes in 0.99.3

  - Fix bug in describePeptides() (close #11).

Changes in 0.99.2

  - Describe the ConnectedComponents() return value.
  - Add/update installation instructions.

Changes in 0.99.1

  - Fix typo and improve documentation.

Changes in 0.99.0

  - Prepare package for Bioconductor submission.