chevreulPlot
This is the development version of chevreulPlot; for the stable release version, see chevreulPlot.
Plots used in the chevreulPlot package
Bioconductor version: Development (3.22)
Tools for plotting SingleCellExperiment objects in the chevreulPlot package. Includes functions for analysis and visualization of single-cell data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Author: Kevin Stachelek [aut, cre]
, Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>
citation("chevreulPlot")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("chevreulPlot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chevreulPlot")| Preprocessing | HTML | R Script |
| Visualization | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization |
| Version | 1.1.2 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0), SingleCellExperiment, chevreulProcess |
| Imports | base, cluster, clustree, ComplexHeatmap(>= 2.5.4), circlize, dplyr, EnsDb.Hsapiens.v86, forcats, fs, ggplot2, grid, plotly, purrr, S4Vectors, scales, scater, scran, scuttle, stats, stringr, tibble, tidyr, utils, wiggleplotr(>= 1.13.1), tidyselect, patchwork |
| System Requirements | |
| URL | https://github.com/whtns/chevreulPlot https://whtns.github.io/chevreulPlot/ |
| Bug Reports | https://github.com/cobriniklab/chevreulPlot/issues |
See More
| Suggests | BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chevreulPlot_1.1.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | chevreulPlot_1.1.2.tgz |
| macOS Binary (arm64) | chevreulPlot_1.1.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chevreulPlot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chevreulPlot |
| Bioc Package Browser | https://code.bioconductor.org/browse/chevreulPlot/ |
| Package Short Url | https://bioconductor.org/packages/chevreulPlot/ |
| Package Downloads Report | Download Stats |