Package: MMUPHin
Type: Package
Title: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in
        Microbiome Studies
Version: 1.24.0
Author: Siyuan Ma
Maintainer: Siyuan MA <syma.research@gmail.com>
Description: MMUPHin is an R package for meta-analysis tasks of
        microbiome cohorts. It has function interfaces for: a)
        covariate-controlled batch- and cohort effect adjustment, b)
        meta-analysis differential abundance testing, c) meta-analysis
        unsupervised discrete structure (clustering) discovery, and d)
        meta-analysis unsupervised continuous structure discovery.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.1
VignetteBuilder: knitr
SystemRequirements: glpk (>= 4.57)
Depends: R (>= 3.6)
Imports: Maaslin2, metafor, fpc, igraph, ggplot2, dplyr, tidyr,
        stringr, cowplot, utils, stats, grDevices
Suggests: testthat, BiocStyle, knitr, rmarkdown, magrittr, vegan,
        phyloseq, curatedMetagenomicData, genefilter
biocViews: Metagenomics, Microbiome, BatchEffect
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libxml2-dev
        libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:55:21 UTC
RemoteUrl: https://github.com/bioc/MMUPHin
RemoteRef: RELEASE_3_22
RemoteSha: 48dbeb222a77a81fd0118eda0bb4a23166639cee
NeedsCompilation: no
Packaged: 2025-12-26 08:17:08 UTC; root
Built: R 4.5.2; ; 2025-12-26 08:19:38 UTC; windows
