********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000)

For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme.nbcr.net.

This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs.  MAST is available
for interactive use and downloading at http://meme.nbcr.net.
********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
DATAFILE= wtspd_down_upstream_1000_TSS.fa
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
AT1G80840                1.0000   1000  AT1G69490                1.0000   1000  
AT1G25400                1.0000   1000  AT1G56240                1.0000   1000  
AT1G35210                1.0000   1000  AT1G35140                1.0000   1000  
AT1G24140                1.0000   1000  AT1G80440                1.0000   1000  
AT1G74930                1.0000   1000  AT1G27730                1.0000   1000  
AT1G72910                1.0000   1000  AT1G21910                1.0000   1000  
AT1G33760                1.0000   1000  AT1G76650                1.0000   1000  
AT1G66090                1.0000   1000  AT1G32920                1.0000   1000  
AT1G56060                1.0000   1000  AT2G44840                1.0000   1000  
AT2G40000                1.0000   1000  AT2G20670                1.0000   1000  
AT2G32200                1.0000   1000  AT2G25735                1.0000   1000  
AT2G44130                1.0000   1000  AT3G46090                1.0000   1000  
AT3G50050                1.0000   1000  AT3G44260                1.0000   1000  
AT3G55980                1.0000   1000  AT3G48650                1.0000   1000  
AT3G15500                1.0000   1000  AT3G04640                1.0000   1000  
AT4G24570                1.0000   1000  AT4G29780                1.0000   1000  
AT4G14450                1.0000   1000  AT4G08950                1.0000   1000  
AT4G25490                1.0000   1000  AT4G27270                1.0000   1000  
AT4G27654                1.0000   1000  AT4G32480                1.0000   1000  
AT4G13395                1.0000   1000  AT5G61600                1.0000   1000  
AT5G51190                1.0000   1000  AT5G54490                1.0000   1000  
AT5G45630                1.0000   1000  AT5G52050                1.0000   1000  
AT5G56550                1.0000   1000  AT5G35777                1.0000   1000  
AT5G25240                1.0000   1000  AT5G57560                1.0000   1000  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme wtspd_down_upstream_1000_TSS.fa -dna -o wtspd_down_meme_TSS -mod anr -nmotifs 3 -minw 6 -maxw 50 -revcomp 

model:  mod=           anr    nmotifs=         3    evt=           inf
object function=  E-value of product of p-values
width:  minw=            6    maxw=           50    minic=        0.00
width:  wg=             11    ws=              1    endgaps=       yes
nsites: minsites=        2    maxsites=       50    wnsites=       0.8
theta:  prob=            1    spmap=         uni    spfuzz=        0.5
global: substring=     yes    branching=      no    wbranch=        no
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
data:   n=           48000    N=              48
strands: + -
sample: seed=            0    seqfrac=         1
Letter frequencies in dataset:
A 0.343 C 0.157 G 0.157 T 0.343 
Background letter frequencies (from dataset with add-one prior applied):
A 0.343 C 0.157 G 0.157 T 0.343 
********************************************************************************


********************************************************************************
MOTIF  1 MEME	width =  15  sites =  50  llr = 588  E-value = 5.3e-032
********************************************************************************
--------------------------------------------------------------------------------
	Motif 1 Description
--------------------------------------------------------------------------------
Simplified        A  6aa998898a589a1
pos.-specific     C  2::::1::1:12::5
probability       G  2::111111:4:1:4
matrix            T  :::::::::::::::

         bits    2.7                
                 2.4                
                 2.1                
                 1.9                
Relative         1.6  **      *   * 
Entropy          1.3  **      *   * 
(17.0 bits)      1.1  ****  * * ****
                 0.8  **************
                 0.5 ***************
                 0.3 ***************
                 0.0 ---------------

Multilevel           AAAAAAAAAAAAAAC
consensus            G         G   G
sequence                            
                                    
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name            Strand  Start   P-value                 Site    
-------------            ------  ----- ---------            ---------------
AT1G21910                    -    744  5.51e-08 ATTAAAAAAA GAAAAAAAAAGAAAC TAGTGAACAT
AT5G57560                    +    377  1.35e-07 CAGTCAATCA AAAAAAAAAAAAAAC TCAAATATGA
AT4G29780                    -    510  1.35e-07 ATTATAAAAA AAAAAAAAAAAAAAC TGGCTCTATT
AT4G29780                    -    131  1.35e-07 AAAGAAAAAA AAAAAAAAAAAAAAC CCAACACAAT
AT3G48650                    -    951  1.35e-07 ATATATAAGC AAAAAAAAAAAAAAC CTAAAGTCAG
AT2G25735                    -     56  1.35e-07 CCCGGCCGAC AAAAAAAAAAAAAAC TCACTTTAGA
AT2G20670                    +    455  1.35e-07 GTTTTACACC AAAAAAAAAAAAAAC ATCTGGATTA
AT2G20670                    +    141  1.35e-07 GTTTTACACC AAAAAAAAAAAAAAC ATCTGGATTA
AT2G40000                    -    853  1.35e-07 TCTCCTTTTT AAAAAAAAAAAAAAC CAGTACTGTG
AT1G80440                    +    292  1.35e-07 TAATAAAACC AAAAAAAAAAAAAAC AAGTTCTGTT
AT1G80440                    +    911  2.35e-07 AATTATATTA AAAAAAGAAAGAAAC GATGAATGAA
AT1G27730                    -    528  2.45e-07 CCAGTTGACA AAAAAAGAAAGAAAG TCTATAACAA
AT3G04640                    -    766  3.77e-07 ATAGAATTTA AAAAAAAAAAGAGAG GGTAAAACAG
AT1G56060                    -     99  7.55e-07 AAAGAATATA AAAAAAAAGAGCAAG ACAGAATCAA
AT1G66090                    +    197  8.88e-07 AAGATGTTGA AAAAGAAAAAAAAAC TTATGTGGAT
AT1G25400                    +    578  8.88e-07 ATACTAGAGA CAAGAAAAAAGAAAC GCATGTGTAA
AT4G24570                    -    762  1.22e-06 CTTTATGGCC GAAAACAAAAGAAAC GTCGCCTGAG
AT1G24140                    +    659  1.22e-06 TCAACGACCC AAAAAAAACAAAAAC ACTTTCAACC
AT5G25240                    -     30  1.39e-06 TTAAGTAAGA CAAAAAAAGAAAAAG GTAACCACTA
AT1G56240                    +    461  1.39e-06 CTCTACACAC CAAAAAAAAAACAAG ACATAGTCCT
AT4G14450                    -    572  1.58e-06 ATCTAAGCCA CAAAACAAAAGAAAG CAAAAATCGG
AT4G08950                    -    883  1.75e-06 AATAAAGATG GAAAAAAAGAGAGAG GTATGTTATA
AT3G48650                    -    166  1.75e-06 TTTAGAAAGA AAAAAAGAAAACAAC AACAACTCTG
AT1G80440                    +    255  1.75e-06 AATAAAACCA AAAAAAAAGAACAAG TTCTGTTGTT
AT3G46090                    +    363  1.99e-06 AAATGCCTCC GAAAAAAACAGCAAC ACATAAAACA
AT5G56550                    +    737  2.13e-06 TAAGAAAAAC CAAAAAAACAAAAAC CAAAAAGCTG
AT5G52050                    +    640  2.13e-06 TATATATTGA CAAGAAAAAAAAAAC ATTTGACAAA
AT3G48650                    +    203  2.13e-06 CTGTAAGATT AAAAGAAGAAGAAAG ATTCGATTTG
AT2G20670                    +    356  2.36e-06 CTTAGTATTC AAAAAAAAAAAAAAA AATTTTAAAC
AT2G20670                    +     41  2.36e-06 CTTAGTATTC AAAAAAAAAAAAAAA AAATTTAAAA
AT1G25400                    +    630  2.90e-06 ATGTAAGAAA GAAAGAAGAAGAAAC CATTTGGCGC
AT3G04640                    +     64  3.15e-06 CAGACTAGAA AAAAATAAAAGAAAG TTTCCAAAGG
AT2G44840                    -    313  3.15e-06 CAACAACAAC AAAAAAGAGAGAGAG AGAGAGAGAG
AT5G25240                    +    781  3.62e-06 CTTAAAGACA AAAGAGAAAAGAAAG CAACCGTTTC
AT3G55980                    -     52  3.92e-06 GGGTGTGCGA CAAAAAAAAAAAAAA TGTCTTCTCT
AT5G61600                    -    948  4.35e-06 TATAGTGGTA AAAAAACAAAGAGAG GGTTCGAGCC
AT4G27654                    +     48  4.35e-06 TTTTTTGATT AAAAGAAACAAAAAG CATCGTTTAA
AT3G55980                    +    943  4.35e-06 ATATAATAAA AAAAAAAAGACCAAG AAAAATAAAA
AT2G44840                    +    873  4.35e-06 AAAAGAACAG AAAAAAAGAAGAAAA CGAATCTTCT
AT1G66090                    -    896  4.35e-06 AGTTAGAGAA GAAAAAAGAACAAAC GAAAAAAGAA
AT3G48650                    +      5  4.64e-06       ATTT CAAAAAAAAAGGAAG TCTATTCGTT
AT2G40000                    +    810  4.64e-06 TATAAAGCCA AAAAACGAAAAAAAG ATTATCCTGA
AT1G24140                    +    622  5.39e-06 AAATTATCAC AAAAAGAAAAAAGAC CAATTCAAAC
AT1G66090                    +    506  5.87e-06 GAGTATGAAA AAAAATAAAAAAAAG TGTTGAAAAA
AT1G56240                    -    123  5.87e-06 AGAAGGTGAG AAAAGAAAAACCAAG AAGATGCCTC
AT3G55980                    +    905  6.72e-06 TATTCGTCAA GAAGAACAAAGAAAG TATTCCAAAA
AT2G32200                    -    343  7.08e-06 AGTTTGACGA AAAAGAAAAAGCAAA GTCTCATTGT
AT2G40000                    -    256  7.65e-06 GAATTGAATA GAAAAAGAGAGAAAA ATCACGTATT
AT4G13395                    +    889  8.74e-06 AAAGAATCTA GAAGAAGAAACAAAC AACATAAACG
AT4G08950                    +    386  1.15e-05 CTAATATGTA GAAAAGAGAAGAGAG AAGTAGTGTT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
AT1G21910                         5.5e-08  743_[-1]_242
AT5G57560                         1.3e-07  376_[+1]_609
AT4G29780                         1.3e-07  130_[-1]_364_[-1]_476
AT3G48650                         4.6e-06  4_[+1]_146_[-1]_22_[+1]_733_[-1]_35
AT2G25735                         1.3e-07  55_[-1]_930
AT2G20670                         2.4e-06  40_[+1]_85_[+1]_200_[+1]_84_[+1]_531
AT2G40000                         4.6e-06  255_[-1]_539_[+1]_28_[-1]_133
AT1G80440                         1.7e-06  254_[+1]_22_[+1]_604_[+1]_75
AT1G27730                         2.5e-07  527_[-1]_458
AT3G04640                         3.1e-06  63_[+1]_687_[-1]_220
AT1G56060                         7.6e-07  98_[-1]_887
AT1G66090                         5.9e-06  196_[+1]_294_[+1]_375_[-1]_90
AT1G25400                         2.9e-06  577_[+1]_37_[+1]_356
AT4G24570                         1.2e-06  761_[-1]_224
AT1G24140                         5.4e-06  621_[+1]_22_[+1]_327
AT5G25240                         3.6e-06  29_[-1]_736_[+1]_205
AT1G56240                         5.9e-06  122_[-1]_323_[+1]_525
AT4G14450                         1.6e-06  571_[-1]_414
AT4G08950                         1.2e-05  385_[+1]_482_[-1]_103
AT3G46090                           2e-06  362_[+1]_623
AT5G56550                         2.1e-06  736_[+1]_249
AT5G52050                         2.1e-06  639_[+1]_346
AT2G44840                         4.4e-06  312_[-1]_545_[+1]_113
AT3G55980                         6.7e-06  51_[-1]_838_[+1]_23_[+1]_43
AT5G61600                         4.4e-06  947_[-1]_38
AT4G27654                         4.4e-06  47_[+1]_938
AT2G32200                         7.1e-06  342_[-1]_643
AT4G13395                         8.7e-06  888_[+1]_97
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 1 width=15 seqs=50
AT1G21910                (  744) GAAAAAAAAAGAAAC  1 
AT5G57560                (  377) AAAAAAAAAAAAAAC  1 
AT4G29780                (  510) AAAAAAAAAAAAAAC  1 
AT4G29780                (  131) AAAAAAAAAAAAAAC  1 
AT3G48650                (  951) AAAAAAAAAAAAAAC  1 
AT2G25735                (   56) AAAAAAAAAAAAAAC  1 
AT2G20670                (  455) AAAAAAAAAAAAAAC  1 
AT2G20670                (  141) AAAAAAAAAAAAAAC  1 
AT2G40000                (  853) AAAAAAAAAAAAAAC  1 
AT1G80440                (  292) AAAAAAAAAAAAAAC  1 
AT1G80440                (  911) AAAAAAGAAAGAAAC  1 
AT1G27730                (  528) AAAAAAGAAAGAAAG  1 
AT3G04640                (  766) AAAAAAAAAAGAGAG  1 
AT1G56060                (   99) AAAAAAAAGAGCAAG  1 
AT1G66090                (  197) AAAAGAAAAAAAAAC  1 
AT1G25400                (  578) CAAGAAAAAAGAAAC  1 
AT4G24570                (  762) GAAAACAAAAGAAAC  1 
AT1G24140                (  659) AAAAAAAACAAAAAC  1 
AT5G25240                (   30) CAAAAAAAGAAAAAG  1 
AT1G56240                (  461) CAAAAAAAAAACAAG  1 
AT4G14450                (  572) CAAAACAAAAGAAAG  1 
AT4G08950                (  883) GAAAAAAAGAGAGAG  1 
AT3G48650                (  166) AAAAAAGAAAACAAC  1 
AT1G80440                (  255) AAAAAAAAGAACAAG  1 
AT3G46090                (  363) GAAAAAAACAGCAAC  1 
AT5G56550                (  737) CAAAAAAACAAAAAC  1 
AT5G52050                (  640) CAAGAAAAAAAAAAC  1 
AT3G48650                (  203) AAAAGAAGAAGAAAG  1 
AT2G20670                (  356) AAAAAAAAAAAAAAA  1 
AT2G20670                (   41) AAAAAAAAAAAAAAA  1 
AT1G25400                (  630) GAAAGAAGAAGAAAC  1 
AT3G04640                (   64) AAAAATAAAAGAAAG  1 
AT2G44840                (  313) AAAAAAGAGAGAGAG  1 
AT5G25240                (  781) AAAGAGAAAAGAAAG  1 
AT3G55980                (   52) CAAAAAAAAAAAAAA  1 
AT5G61600                (  948) AAAAAACAAAGAGAG  1 
AT4G27654                (   48) AAAAGAAACAAAAAG  1 
AT3G55980                (  943) AAAAAAAAGACCAAG  1 
AT2G44840                (  873) AAAAAAAGAAGAAAA  1 
AT1G66090                (  896) GAAAAAAGAACAAAC  1 
AT3G48650                (    5) CAAAAAAAAAGGAAG  1 
AT2G40000                (  810) AAAAACGAAAAAAAG  1 
AT1G24140                (  622) AAAAAGAAAAAAGAC  1 
AT1G66090                (  506) AAAAATAAAAAAAAG  1 
AT1G56240                (  123) AAAAGAAAAACCAAG  1 
AT3G55980                (  905) GAAGAACAAAGAAAG  1 
AT2G32200                (  343) AAAAGAAAAAGCAAA  1 
AT2G40000                (  256) GAAAAAGAGAGAAAA  1 
AT4G13395                (  889) GAAGAAGAAACAAAC  1 
AT4G08950                (  386) GAAAAGAGAAGAGAG  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 47328 bayes= 11.0187 E= 5.3e-032 
    90      3     35  -1229 
   154  -1229  -1229  -1229 
   154  -1229  -1229  -1229 
   139  -1229    -65  -1229 
   136  -1229    -39  -1229 
   129   -139   -139   -310 
   126   -197    -17  -1229 
   139  -1229    -65  -1229 
   119    -97    -17  -1229 
   154  -1229  -1229  -1229 
    49    -97    149  -1229 
   126      3   -297  -1229 
   136  -1229    -39  -1229 
   154  -1229  -1229  -1229 
  -151    155    142  -1229 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 50 E= 5.3e-032 
 0.640000  0.160000  0.200000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.900000  0.000000  0.100000  0.000000 
 0.880000  0.000000  0.120000  0.000000 
 0.840000  0.060000  0.060000  0.040000 
 0.820000  0.040000  0.140000  0.000000 
 0.900000  0.000000  0.100000  0.000000 
 0.780000  0.080000  0.140000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.480000  0.080000  0.440000  0.000000 
 0.820000  0.160000  0.020000  0.000000 
 0.880000  0.000000  0.120000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.120000  0.460000  0.420000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 1 regular expression
--------------------------------------------------------------------------------
[AG]AAAAAAAAA[AG]AAA[CG]
--------------------------------------------------------------------------------




Time 728.07 secs.

********************************************************************************


********************************************************************************
MOTIF  2 MEME	width =  29  sites =  44  llr = 546  E-value = 4.8e-007
********************************************************************************
--------------------------------------------------------------------------------
	Motif 2 Description
--------------------------------------------------------------------------------
Simplified        A  :232:4233132271312:::1:2::12:
pos.-specific     C  6432936335425:818:23356335316
probability       G  :21::1:211::3:121413:::::22::
matrix            T  313612223326:3:41373633663473

         bits    2.7                              
                 2.4                              
                 2.1                              
                 1.9     *                        
Relative         1.6     *         *              
Entropy          1.3     *         * *            
(17.9 bits)      1.1 *   * *       * *     *     *
                 0.8 *   * *     * * *    **  *  *
                 0.5 *   * *  * **** * ***** **  *
                 0.3 ** ** ** ****** *************
                 0.0 -----------------------------

Multilevel           CCATCACCTCCTCACTCGTGTCCTTCTTC
consensus            TAT  C AATACGT A TCTCTTCCTC T
sequence              GC  T  C T    G   C         
                                                  
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name            Strand  Start   P-value                        Site           
-------------            ------  ----- ---------            -----------------------------
AT4G29780                    +    887  1.47e-12 TAGCTTACCG CGTTCACACCTTCACGCGCTTCCTTCGTC CTTTGCGTCT
AT5G25240                    +    805  2.43e-09 GCAACCGTTT CGCTCCCGCCTTCACAGCTGTCTTTCATC ATTAGCCAGC
AT4G25490                    +    149  2.43e-09 TTTGTTGTTT TCTTCACCTTACCACTCTTTTTTTCCCTC TTTGTTGTGT
AT3G55980                    +    128  1.02e-08 TCACGCACCT CTCACACAACATGACTCTCCTCCTTGGTT TAGCCTAATT
AT2G40000                    +    924  2.73e-08 GGTATTATTC CACACGCCTTTTTTCTCGTCCCCATCCTC TATCCACATT
AT1G74930                    +    517  4.37e-08 TCTCAAGTTA TGATCAACAGACGACTCGCTTCTTTCTTC AAAACAGTGA
AT4G24570                    +    846  7.76e-08 TGGGCTGTCT CTGTCTCACTCACACACGCGTTTTCCTAC TTTTTGACTA
AT4G25490                    -    827  8.68e-08 CACGATGTTC CACTCGCTGTCTGACGTGTGTCCTTTGAC CCTTGTAAAG
AT1G76650                    -    159  8.68e-08 AAAAAACAAG CATTCACTTTCTCACCCTTGCTCTCTTCT TATATATAAC
AT1G74930                    +    937  1.21e-07 GCGTTGATCT TCTTCCTCACTTGCCACTTCCACTTCTTC ATATATAAAT
AT1G35140                    +    494  1.35e-07 ATGCAAATGC TCTTCGCCACATAAATCTTGCACTTTCTC CAGCTATATA
AT4G32480                    +    815  1.68e-07 ACTTAGTTCC CAATCATATACTGACACGTCATCTTCTTC CAAACTCAAA
AT4G13395                    +    939  1.88e-07 ACGTAGCAGC CGCGTCCGACATCACACGCTCTCTTCTAT AAATATTCTC
AT3G44260                    +    884  1.88e-07 AGTCACTCAA ACCCCACCACTTGACGCGTTTCTCGTCCC CACTTCTTCT
AT1G25400                    -    702  2.09e-07 TCGTCGACGA TCGTCACCTCCTCAGTGATTCCTCCGATC CGATTCAATG
AT5G45630                    -    280  2.87e-07 TACGCGTTTT CATTCTCAACGTCACGCGTGTACGCGGTT ACACGCTTAA
AT4G25490                    +    921  4.35e-07 AAACTCCGTG TGCTCCCCACATATCCGTTATCTCTCCTC CGGCCAATAT
AT4G25490                    +     71  4.81e-07 CCCTACCTTC CCCACCAGCCTTCACTGGCCCCATACGTC ACTCTCAAGC
AT2G32200                    -      2  4.81e-07 AGAAATTATA CCATCTTCACTTGTCTCTTTTCCATCATG A         
AT2G20670                    +    880  5.33e-07 ACACGTCCTC CAATCACAGTTTCACACGTCACCATTCGC GGCGCCATGT
AT3G55980                    -    804  5.90e-07 GAGCCATTGT CGCTCTTGTGCTGACTCTTCTACTCGTAT ACAAGGAAAA
AT2G44130                    +    936  5.90e-07 CGCGTTATTT CAACCGCAAGCAAACTCATCCTCCTCTTT CCCTATTTAA
AT1G74930                    +     53  5.90e-07 TCGATAATGG CGACCACAACAACAAGAATCTTCTCCTTC ATGCTCATGA
AT3G15500                    -    409  6.52e-07 ACGGATAGAA CTACCACAAGCCGACACATGTCTTGTGTC TATTGGTTGA
AT5G45630                    +    322  7.96e-07 ACGCGTAAAT GCGTTTCCTCCTGACGCGCCGCTCTGTTT GCGTTTTGTG
AT1G72910                    +    273  7.96e-07 GCAAACCAAT CATCCACATCCTCTCTCACTTTCTTTATG GTTTCCAAAG
AT1G80840                    -    813  7.96e-07 GTCTTTAGAC TCAACTCGGCTTCTATCGGGTCCACCCGC ACACGTATTT
AT1G21910                    +    925  9.69e-07 AAATAATATT TCATCTCTTCCTCTCCCATACCCCTCCCA AATCAATCCA
AT4G14450                    +    959  1.18e-06 ATGTACCTAG TCAACATGTTACAAGTCGTGGCCCTCCTC ACCTTATTAT
AT1G27730                    +    920  1.18e-06 TTCACACTTT CCTACCACTTGTCACGCAACTTCCTTCTC CACACTCCAC
AT1G56240                    +     39  1.30e-06 ACGGAAAATA CAGTTCACTAATCACACTTTCTCTTGTTC AAATTTATTA
AT4G32480                    +    899  1.43e-06 ATCTGTTTTT TCTCCCACCTCTCAGGCGGGTCCCTAACC CCTTATCCGG
AT4G25490                    -    210  1.89e-06 ACAAAAATAT CTCTCTCGTTACCTCTCGCTCTCACGTTA TTGACATTTA
AT3G15500                    +    488  1.89e-06 TGAACTCATC CCATCATTCACTTACACGTGTTTTTTCTT CTTGACGACC
AT1G27730                    +    746  1.89e-06 ACCAACACCA CTTGCACACACACACACGTGTACTAGGTC AAACCAAACG
AT1G72910                    +    806  2.74e-06 CATTATCTTA CTTTGGCGGCCCATCTATTCTCTTCCCTC TTTCTGAGTA
AT5G56550                    -    115  3.01e-06 TTACGCTATA TCCTTAAACCAAGAATCTTGTCCCTCTTT AAACAACTTT
AT1G35140                    +    579  3.01e-06 TTAGTCCAAC CGAACATTACATGACTTTCTTCTTCCCAC GGCTTTTAAT
AT5G57560                    +    880  3.29e-06 AATCACCAGC TGTTGCCTCAAAGACGCGGCTTCTTCTTT CGCCATACGA
AT4G27270                    +    178  3.60e-06 ACAAAACCCA CAACCCAATTTCCACGATTTTCTTCCTAC CATGGCCGGA
AT5G25240                    +    856  4.31e-06 ATCCTAATCC CGCTCCTCTCACATCACTGTCACACTCTT CTCATAACAG
AT1G35210                    +    935  4.71e-06 CTCCAATGAA CCATCCACGACCAAATCATTCTCTCCATT AAAATTATAT
AT1G32920                    +    140  6.13e-06 CAATTCAATA TCGACCCTCCAACTCCATTGCCTATCTAC ACAATTCAAT
AT1G80840                    +    916  1.21e-05 AAAAGCACAT GCTCCTCTCTCTCTCTTCTGCCTCTTTCC ATCTAGTTTC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
AT4G29780                         1.5e-12  886_[+2]_85
AT5G25240                         4.3e-06  804_[+2]_22_[+2]_116
AT4G25490                         1.9e-06  70_[+2]_49_[+2]_32_[-2]_588_[-2]_
                                           65_[+2]_51
AT3G55980                         5.9e-07  127_[+2]_647_[-2]_168
AT2G40000                         2.7e-08  923_[+2]_48
AT1G74930                         5.9e-07  52_[+2]_435_[+2]_391_[+2]_35
AT4G24570                         7.8e-08  845_[+2]_126
AT1G76650                         8.7e-08  158_[-2]_813
AT1G35140                           3e-06  493_[+2]_56_[+2]_393
AT4G32480                         1.4e-06  814_[+2]_55_[+2]_73
AT4G13395                         1.9e-07  938_[+2]_33
AT3G44260                         1.9e-07  883_[+2]_88
AT1G25400                         2.1e-07  701_[-2]_270
AT5G45630                           8e-07  279_[-2]_13_[+2]_650
AT2G32200                         4.8e-07  1_[-2]_970
AT2G20670                         5.3e-07  879_[+2]_92
AT2G44130                         5.9e-07  935_[+2]_36
AT3G15500                         1.9e-06  408_[-2]_50_[+2]_484
AT1G72910                         2.7e-06  272_[+2]_504_[+2]_166
AT1G80840                         1.2e-05  812_[-2]_74_[+2]_56
AT1G21910                         9.7e-07  924_[+2]_47
AT4G14450                         1.2e-06  958_[+2]_13
AT1G27730                         1.9e-06  745_[+2]_145_[+2]_52
AT1G56240                         1.3e-06  38_[+2]_933
AT5G56550                           3e-06  114_[-2]_857
AT5G57560                         3.3e-06  879_[+2]_92
AT4G27270                         3.6e-06  177_[+2]_794
AT1G35210                         4.7e-06  934_[+2]_37
AT1G32920                         6.1e-06  139_[+2]_832
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 2 width=29 seqs=44
AT4G29780                (  887) CGTTCACACCTTCACGCGCTTCCTTCGTC  1 
AT5G25240                (  805) CGCTCCCGCCTTCACAGCTGTCTTTCATC  1 
AT4G25490                (  149) TCTTCACCTTACCACTCTTTTTTTCCCTC  1 
AT3G55980                (  128) CTCACACAACATGACTCTCCTCCTTGGTT  1 
AT2G40000                (  924) CACACGCCTTTTTTCTCGTCCCCATCCTC  1 
AT1G74930                (  517) TGATCAACAGACGACTCGCTTCTTTCTTC  1 
AT4G24570                (  846) CTGTCTCACTCACACACGCGTTTTCCTAC  1 
AT4G25490                (  827) CACTCGCTGTCTGACGTGTGTCCTTTGAC  1 
AT1G76650                (  159) CATTCACTTTCTCACCCTTGCTCTCTTCT  1 
AT1G74930                (  937) TCTTCCTCACTTGCCACTTCCACTTCTTC  1 
AT1G35140                (  494) TCTTCGCCACATAAATCTTGCACTTTCTC  1 
AT4G32480                (  815) CAATCATATACTGACACGTCATCTTCTTC  1 
AT4G13395                (  939) CGCGTCCGACATCACACGCTCTCTTCTAT  1 
AT3G44260                (  884) ACCCCACCACTTGACGCGTTTCTCGTCCC  1 
AT1G25400                (  702) TCGTCACCTCCTCAGTGATTCCTCCGATC  1 
AT5G45630                (  280) CATTCTCAACGTCACGCGTGTACGCGGTT  1 
AT4G25490                (  921) TGCTCCCCACATATCCGTTATCTCTCCTC  1 
AT4G25490                (   71) CCCACCAGCCTTCACTGGCCCCATACGTC  1 
AT2G32200                (    2) CCATCTTCACTTGTCTCTTTTCCATCATG  1 
AT2G20670                (  880) CAATCACAGTTTCACACGTCACCATTCGC  1 
AT3G55980                (  804) CGCTCTTGTGCTGACTCTTCTACTCGTAT  1 
AT2G44130                (  936) CAACCGCAAGCAAACTCATCCTCCTCTTT  1 
AT1G74930                (   53) CGACCACAACAACAAGAATCTTCTCCTTC  1 
AT3G15500                (  409) CTACCACAAGCCGACACATGTCTTGTGTC  1 
AT5G45630                (  322) GCGTTTCCTCCTGACGCGCCGCTCTGTTT  1 
AT1G72910                (  273) CATCCACATCCTCTCTCACTTTCTTTATG  1 
AT1G80840                (  813) TCAACTCGGCTTCTATCGGGTCCACCCGC  1 
AT1G21910                (  925) TCATCTCTTCCTCTCCCATACCCCTCCCA  1 
AT4G14450                (  959) TCAACATGTTACAAGTCGTGGCCCTCCTC  1 
AT1G27730                (  920) CCTACCACTTGTCACGCAACTTCCTTCTC  1 
AT1G56240                (   39) CAGTTCACTAATCACACTTTCTCTTGTTC  1 
AT4G32480                (  899) TCTCCCACCTCTCAGGCGGGTCCCTAACC  1 
AT4G25490                (  210) CTCTCTCGTTACCTCTCGCTCTCACGTTA  1 
AT3G15500                (  488) CCATCATTCACTTACACGTGTTTTTTCTT  1 
AT1G27730                (  746) CTTGCACACACACACACGTGTACTAGGTC  1 
AT1G72910                (  806) CTTTGGCGGCCCATCTATTCTCTTCCCTC  1 
AT5G56550                (  115) TCCTTAAACCAAGAATCTTGTCCCTCTTT  1 
AT1G35140                (  579) CGAACATTACATGACTTTCTTCTTCCCAC  1 
AT5G57560                (  880) TGTTGCCTCAAAGACGCGGCTTCTTCTTT  1 
AT4G27270                (  178) CAACCCAATTTCCACGATTTTCTTCCTAC  1 
AT5G25240                (  856) CGCTCCTCTCACATCACTGTCACACTCTT  1 
AT1G35210                (  935) CCATCCACGACCAAATCATTCTCTCCATT  1 
AT1G32920                (  140) TCGACCCTCCAACTCCATTGCCTATCTAC  1 
AT1G80840                (  916) GCTCCTCTCTCTCTCTTCTGCCTCTTTCC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 29 n= 46656 bayes= 11.0761 E= 4.8e-007 
  -391    202   -179    -21 
   -59    138     53   -133 
   -11     80    -47    -21 
   -91     21   -179     79 
 -1210    246   -179   -191 
    17     91    -47    -74 
   -91    202  -1210    -91 
   -21    112     21    -91 
   -21     67    -47     -1 
  -133    167    -79    -33 
    -1    130   -179    -59 
  -111     38  -1210     89 
  -111    167     91   -291 
   108   -279  -1210    -46 
  -159    238   -120  -1210 
   -46    -79     53     33 
  -191    225    -79   -233 
   -91   -179    146     -1 
  -391     53    -79     94 
  -291     91    112    -11 
  -291    112   -179     73 
  -133    180  -1210    -11 
  -391    202  -1210     -1 
  -111     67   -279     73 
  -291    102   -179     79 
  -391    180     21    -46 
  -133    102      2     17 
  -111    -47   -179     99 
  -291    202   -179    -33 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 29 nsites= 44 E= 4.8e-007 
 0.022727  0.636364  0.045455  0.295455 
 0.227273  0.409091  0.227273  0.136364 
 0.318182  0.272727  0.113636  0.295455 
 0.181818  0.181818  0.045455  0.590909 
 0.000000  0.863636  0.045455  0.090909 
 0.386364  0.295455  0.113636  0.204545 
 0.181818  0.636364  0.000000  0.181818 
 0.295455  0.340909  0.181818  0.181818 
 0.295455  0.250000  0.113636  0.340909 
 0.136364  0.500000  0.090909  0.272727 
 0.340909  0.386364  0.045455  0.227273 
 0.159091  0.204545  0.000000  0.636364 
 0.159091  0.500000  0.295455  0.045455 
 0.727273  0.022727  0.000000  0.250000 
 0.113636  0.818182  0.068182  0.000000 
 0.250000  0.090909  0.227273  0.431818 
 0.090909  0.750000  0.090909  0.068182 
 0.181818  0.045455  0.431818  0.340909 
 0.022727  0.227273  0.090909  0.659091 
 0.045455  0.295455  0.340909  0.318182 
 0.045455  0.340909  0.045455  0.568182 
 0.136364  0.545455  0.000000  0.318182 
 0.022727  0.636364  0.000000  0.340909 
 0.159091  0.250000  0.022727  0.568182 
 0.045455  0.318182  0.045455  0.590909 
 0.022727  0.545455  0.181818  0.250000 
 0.136364  0.318182  0.159091  0.386364 
 0.159091  0.113636  0.045455  0.681818 
 0.045455  0.636364  0.045455  0.272727 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 2 regular expression
--------------------------------------------------------------------------------
[CT][CAG][ATC]TC[ACT]C[CA][TAC][CT][CAT][TC][CG][AT]C[TAG]C[GT][TC][GTC][TC][CT][CT][TC][TC][CT][TC]T[CT]
--------------------------------------------------------------------------------




Time 1459.41 secs.

********************************************************************************


********************************************************************************
MOTIF  3 MEME	width =  11  sites =  48  llr = 468  E-value = 7.6e+001
********************************************************************************
--------------------------------------------------------------------------------
	Motif 3 Description
--------------------------------------------------------------------------------
Simplified        A  :957a788aaa
pos.-specific     C  9153:322:::
probability       G  1::::::::::
matrix            T  :::::::::::

         bits    2.7            
                 2.4            
                 2.1 *          
                 1.9 *          
Relative         1.6 *       ** 
Entropy          1.3 *   *   ***
(14.1 bits)      1.1 *** *******
                 0.8 ***********
                 0.5 ***********
                 0.3 ***********
                 0.0 -----------

Multilevel           CACAAAAAAAA
consensus              AC CCC   
sequence                        
                                
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name            Strand  Start   P-value               Site  
-------------            ------  ----- ---------            -----------
AT4G13395                    -    693  2.36e-06 TCTTAACACA CACAAAAAAAA AACTGCATAG
AT3G46090                    +    611  2.36e-06 GATTTAAGTT CACAAAAAAAA AATCTAGAAG
AT1G66090                    -     58  2.36e-06 TCCGCGGTCA CACAAAAAAAA GTCTTCGTGC
AT1G80440                    -    524  2.36e-06 TACTAGTGCG CACAACAAAAA ACAGAATAAA
AT4G24570                    +    351  3.44e-06 TCCTCGTCTT CACCAAAAAAA AAGAGTCCTC
AT1G24140                    +    150  3.44e-06 ACCCAAAGCA CACCAAAAAAA AAATGTAATT
AT5G54490                    +    986  4.52e-06 AAAACTTACT CACAACACAAA ACCC      
AT4G24570                    +    983  4.52e-06 AAAACCGCGT CACAAAACAAA ACTCGCT   
AT1G35140                    +    987  4.52e-06 TATAACACAA CACAACACAAA CTC       
AT1G56240                    +    893  6.10e-06 TTTGGTCAAC CACCAAACAAA TAATATATAA
AT1G69490                    +    286  6.10e-06 TTAGAATCTT CACAACCAAAA GCTATTTTCT
AT2G32200                    -    442  7.67e-06 ATATATCGCG CCCAAAAAAAA GAAGACGATA
AT5G25240                    -    301  1.33e-05 ATTTTCTTGA CAAAAAAAAAA TGAAATTACT
AT5G35777                    +    641  1.33e-05 ATTTTTTAAT CAAAACAAAAA AATATTTGTA
AT4G32480                    -    183  1.33e-05 CGGTTTCATG CAAAAAAAAAA ATGTTTATGT
AT4G14450                    +    853  1.33e-05 AGAGTATTGC CAAAACAAAAA TGTAAAGAAA
AT3G15500                    +    756  1.33e-05 ATTGACAATA CAAAAAAAAAA TCATAAGAGG
AT3G46090                    +    659  1.33e-05 GAACCGACGT CAAAAAAAAAA TATGCACGAA
AT1G76650                    -    899  1.33e-05 GAGATTTGTA CAAAAAAAAAA CTAAAAAGTA
AT1G27730                    +    811  1.38e-05 CTCTCTTTAC CCCCAAAAAAA CATCTAGATA
AT2G44840                    +    719  1.64e-05 GAACAGCCAA CAACAAAAAAA GAAATCGAAG
AT1G80440                    +    892  1.64e-05 ATAAAATATA CAACACAAAAA TTATATTAAA
AT4G27654                    -     34  1.93e-05 TTCTTTTAAT CAAAAAACAAA TTAACTTAAT
AT2G25735                    +    289  1.93e-05 TACCTTTGCC CAAAAAACAAA GGTATATTAT
AT1G27730                    +    244  2.00e-05 TGGTTGCATA CCCAACCAAAA AAACAGGTAA
AT5G45630                    +    190  2.34e-05 TTGTGTTGGA CAAAACCAAAA CCGTGGCACG
AT4G27270                    -    422  2.34e-05 GCCTAAACAT CAACACACAAA ACTCCATCTG
AT4G29780                    +    989  2.34e-05 CGTCTGAAAC CAAAACCAAAA C         
AT3G50050                    +    145  2.34e-05 AAATTAAAAA CAAAAACAAAA TGTACAGAGG
AT4G25490                    -    296  2.60e-05 ATATTGTATT GACAAAAAAAA GGTATAAAAA
AT1G56240                    +    710  2.60e-05 TGAAATTTTT GACAAAAAAAA TAGTTTGTGA
AT1G80840                    -    354  2.60e-05 TGCATGGAGT GACAAAAAAAA AGATAACTTG
AT1G80840                    -    187  2.60e-05 TAGCACGTTT GACAAAAAAAA TGACAACTAG
AT3G50050                    +    747  2.71e-05 AAAAAACTGA CAACAACAAAA CAATACATAC
AT1G33760                    +    385  2.71e-05 TTTGGTCTTA CAACAACAAAA CACAATATAC
AT5G57560                    +    402  3.08e-05 TCAAATATGA GACCACAAAAA TTACTCAAAG
AT5G25240                    -    544  3.08e-05 GAGAAATTTT GACCAAAAAAA TATGATTCTA
AT3G15500                    +    525  3.08e-05 TTCTTGACGA CCAAAAAAAAA CAATTTGGCA
AT3G55980                    +    765  3.08e-05 TCAATTGTTT GACCAAAAAAA GAGAAGCATA
AT2G44840                    +    804  3.08e-05 GACCAAAAGT CCAAACAAAAA TAAATAACTA
AT5G51190                    +    986  3.18e-05 CCTCCAATCT CAAAAACCAAA ATCC      
AT4G27270                    +    761  3.94e-05 ATTTGTAGCA CACACAAAAAA ATCATCATCC
AT3G48650                    +    550  3.94e-05 TATATAACAG CCAAAAACAAA GTTGTTTCTT
AT3G04640                    +      3  4.25e-05         AA CACCCCAAAAA ATCACAAATT
AT1G66090                    +    794  4.25e-05 CTTTCGTTAA CCAAAACAAAA TTATAATTTT
AT5G45630                    -    174  5.18e-05 TTTTGTCCAA CACAACACAAC ACAAGACTCG
AT1G21910                    -    499  5.18e-05 ATTGAGGAAC CACAAAACAAC AATTAATTAT
AT4G14450                    -    467  7.17e-05 TTAACTTCTA CACGAACAAAA AAATGTAATC
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
AT4G13395                         2.4e-06  692_[-3]_297
AT3G46090                         1.3e-05  610_[+3]_37_[+3]_331
AT1G66090                         4.2e-05  57_[-3]_725_[+3]_196
AT1G80440                         1.6e-05  523_[-3]_357_[+3]_98
AT4G24570                         4.5e-06  350_[+3]_621_[+3]_7
AT1G24140                         3.4e-06  149_[+3]_840
AT5G54490                         4.5e-06  985_[+3]_4
AT1G35140                         4.5e-06  986_[+3]_3
AT1G56240                         2.6e-05  709_[+3]_172_[+3]_97
AT1G69490                         6.1e-06  285_[+3]_704
AT2G32200                         7.7e-06  441_[-3]_548
AT5G25240                         3.1e-05  300_[-3]_232_[-3]_446
AT5G35777                         1.3e-05  640_[+3]_349
AT4G32480                         1.3e-05  182_[-3]_807
AT4G14450                         7.2e-05  466_[-3]_375_[+3]_137
AT3G15500                         3.1e-05  524_[+3]_220_[+3]_234
AT1G76650                         1.3e-05  898_[-3]_91
AT1G27730                         1.4e-05  243_[+3]_556_[+3]_179
AT2G44840                         3.1e-05  718_[+3]_74_[+3]_186
AT4G27654                         1.9e-05  33_[-3]_956
AT2G25735                         1.9e-05  288_[+3]_701
AT5G45630                         5.2e-05  173_[-3]_5_[+3]_800
AT4G27270                         3.9e-05  421_[-3]_328_[+3]_229
AT4G29780                         2.3e-05  988_[+3]_1
AT3G50050                         2.7e-05  144_[+3]_591_[+3]_243
AT4G25490                         2.6e-05  295_[-3]_694
AT1G80840                         2.6e-05  186_[-3]_156_[-3]_636
AT1G33760                         2.7e-05  384_[+3]_605
AT5G57560                         3.1e-05  401_[+3]_588
AT3G55980                         3.1e-05  764_[+3]_225
AT5G51190                         3.2e-05  985_[+3]_4
AT3G48650                         3.9e-05  549_[+3]_440
AT3G04640                         4.2e-05  2_[+3]_987
AT1G21910                         5.2e-05  498_[-3]_491
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF 3 width=11 seqs=48
AT4G13395                (  693) CACAAAAAAAA  1 
AT3G46090                (  611) CACAAAAAAAA  1 
AT1G66090                (   58) CACAAAAAAAA  1 
AT1G80440                (  524) CACAACAAAAA  1 
AT4G24570                (  351) CACCAAAAAAA  1 
AT1G24140                (  150) CACCAAAAAAA  1 
AT5G54490                (  986) CACAACACAAA  1 
AT4G24570                (  983) CACAAAACAAA  1 
AT1G35140                (  987) CACAACACAAA  1 
AT1G56240                (  893) CACCAAACAAA  1 
AT1G69490                (  286) CACAACCAAAA  1 
AT2G32200                (  442) CCCAAAAAAAA  1 
AT5G25240                (  301) CAAAAAAAAAA  1 
AT5G35777                (  641) CAAAACAAAAA  1 
AT4G32480                (  183) CAAAAAAAAAA  1 
AT4G14450                (  853) CAAAACAAAAA  1 
AT3G15500                (  756) CAAAAAAAAAA  1 
AT3G46090                (  659) CAAAAAAAAAA  1 
AT1G76650                (  899) CAAAAAAAAAA  1 
AT1G27730                (  811) CCCCAAAAAAA  1 
AT2G44840                (  719) CAACAAAAAAA  1 
AT1G80440                (  892) CAACACAAAAA  1 
AT4G27654                (   34) CAAAAAACAAA  1 
AT2G25735                (  289) CAAAAAACAAA  1 
AT1G27730                (  244) CCCAACCAAAA  1 
AT5G45630                (  190) CAAAACCAAAA  1 
AT4G27270                (  422) CAACACACAAA  1 
AT4G29780                (  989) CAAAACCAAAA  1 
AT3G50050                (  145) CAAAAACAAAA  1 
AT4G25490                (  296) GACAAAAAAAA  1 
AT1G56240                (  710) GACAAAAAAAA  1 
AT1G80840                (  354) GACAAAAAAAA  1 
AT1G80840                (  187) GACAAAAAAAA  1 
AT3G50050                (  747) CAACAACAAAA  1 
AT1G33760                (  385) CAACAACAAAA  1 
AT5G57560                (  402) GACCACAAAAA  1 
AT5G25240                (  544) GACCAAAAAAA  1 
AT3G15500                (  525) CCAAAAAAAAA  1 
AT3G55980                (  765) GACCAAAAAAA  1 
AT2G44840                (  804) CCAAACAAAAA  1 
AT5G51190                (  986) CAAAAACCAAA  1 
AT4G27270                (  761) CACACAAAAAA  1 
AT3G48650                (  550) CCAAAAACAAA  1 
AT3G04640                (    3) CACCCCAAAAA  1 
AT1G66090                (  794) CCAAAACAAAA  1 
AT5G45630                (  174) CACAACACAAC  1 
AT1G21910                (  499) CACAAAACAAC  1 
AT4G14450                (  467) CACGAACAAAA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 11 n= 47520 bayes= 11.0501 E= 7.6e+001 
 -1223    244    -11  -1223 
   132    -11  -1223  -1223 
    42    179  -1223  -1223 
   105     79   -291  -1223 
   148   -191  -1223  -1223 
   100     99  -1223  -1223 
   121     41  -1223  -1223 
   117     54  -1223  -1223 
   154  -1223  -1223  -1223 
   154  -1223  -1223  -1223 
   148   -191  -1223  -1223 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 11 nsites= 48 E= 7.6e+001 
 0.000000  0.854167  0.145833  0.000000 
 0.854167  0.145833  0.000000  0.000000 
 0.458333  0.541667  0.000000  0.000000 
 0.708333  0.270833  0.020833  0.000000 
 0.958333  0.041667  0.000000  0.000000 
 0.687500  0.312500  0.000000  0.000000 
 0.791667  0.208333  0.000000  0.000000 
 0.770833  0.229167  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.958333  0.041667  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif 3 regular expression
--------------------------------------------------------------------------------
CA[CA][AC]A[AC][AC][AC]AAA
--------------------------------------------------------------------------------




Time 2134.85 secs.

********************************************************************************


********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************

--------------------------------------------------------------------------------
	Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
AT1G80840                        1.05e-03  186_[-3(2.60e-05)]_156_\
    [-3(2.60e-05)]_308_[+3(7.17e-05)]_129_[-2(7.96e-07)]_74_[+2(1.21e-05)]_56
AT1G69490                        1.84e-02  98_[+1(9.21e-05)]_172_\
    [+3(6.10e-06)]_704
AT1G25400                        4.06e-05  577_[+1(8.88e-07)]_37_\
    [+1(2.90e-06)]_57_[-2(2.09e-07)]_270
AT1G56240                        7.49e-06  38_[+2(1.30e-06)]_26_[+3(8.51e-05)]_\
    18_[-1(5.87e-06)]_323_[+1(1.39e-06)]_234_[+3(2.60e-05)]_172_[+3(6.10e-06)]_\
    97
AT1G35210                        1.59e-02  277_[-3(9.64e-05)]_509_\
    [+2(2.92e-05)]_108_[+2(4.71e-06)]_37
AT1G35140                        4.36e-05  493_[+2(1.35e-07)]_14_\
    [+3(4.36e-05)]_31_[+2(3.01e-06)]_116_[+2(6.68e-05)]_174_[-1(8.06e-05)]_7_\
    [+2(4.29e-05)]_9_[+3(4.52e-06)]_3
AT1G24140                        5.97e-04  149_[+3(3.44e-06)]_461_\
    [+1(5.39e-06)]_22_[+1(1.22e-06)]_327
AT1G80440                        1.76e-05  254_[+1(1.75e-06)]_22_\
    [+1(1.35e-07)]_86_[-2(5.36e-05)]_102_[-3(2.36e-06)]_357_[+3(1.64e-05)]_8_\
    [+1(2.35e-07)]_75
AT1G74930                        6.49e-05  52_[+2(5.90e-07)]_435_\
    [+2(4.37e-08)]_253_[+1(9.09e-06)]_71_[+2(3.41e-05)]_23_[+2(1.21e-07)]_35
AT1G27730                        5.03e-06  243_[+3(2.00e-05)]_174_\
    [+1(4.84e-05)]_84_[-1(2.45e-07)]_203_[+2(1.89e-06)]_36_[+3(1.38e-05)]_98_\
    [+2(1.18e-06)]_52
AT1G72910                        4.68e-03  272_[+2(7.96e-07)]_504_\
    [+2(2.74e-06)]_166
AT1G21910                        3.50e-06  498_[-3(5.18e-05)]_234_\
    [-1(5.51e-08)]_166_[+2(9.69e-07)]_47
AT1G33760                        9.43e-02  384_[+3(2.71e-05)]_605
AT1G76650                        3.58e-05  158_[-2(8.68e-08)]_366_\
    [+1(3.28e-05)]_330_[-3(1.33e-05)]_91
AT1G66090                        4.66e-04  57_[-3(2.36e-06)]_128_\
    [+1(8.88e-07)]_294_[+1(5.87e-06)]_4_[+3(8.51e-05)]_258_[+3(4.25e-05)]_91_\
    [-1(4.35e-06)]_90
AT1G32920                        9.49e-03  13_[+1(6.33e-05)]_34_[-2(3.97e-05)]_\
    48_[+2(6.13e-06)]_666_[+1(4.58e-05)]_151
AT1G56060                        1.13e-03  14_[+2(5.36e-05)]_55_[-1(7.55e-07)]_\
    112_[-2(2.31e-05)]_746
AT2G44840                        1.21e-05  296_[+2(2.09e-07)]_393_\
    [+3(1.64e-05)]_49_[+1(2.70e-05)]_10_[+3(3.08e-05)]_58_[+1(4.35e-06)]_113
AT2G40000                        1.71e-06  255_[-1(7.65e-06)]_298_\
    [+2(7.72e-05)]_212_[+1(4.64e-06)]_28_[-1(1.35e-07)]_56_[+2(2.73e-08)]_48
AT2G20670                        4.17e-07  40_[+1(2.36e-06)]_85_[+1(1.35e-07)]_\
    137_[+3(5.18e-05)]_52_[+1(2.36e-06)]_84_[+1(1.35e-07)]_135_[+3(5.18e-05)]_\
    264_[+2(5.33e-07)]_76_[-1(3.55e-05)]_1
AT2G32200                        2.66e-05  1_[-2(4.81e-07)]_312_[-1(7.08e-06)]_\
    84_[-3(7.67e-06)]_161_[-2(7.72e-05)]_208_[-1(5.91e-05)]_135
AT2G25735                        1.27e-04  7_[-2(9.56e-05)]_19_[-1(1.35e-07)]_\
    218_[+3(1.93e-05)]_701
AT2G44130                        2.29e-02  935_[+2(5.90e-07)]_36
AT3G46090                        2.47e-04  18_[+1(5.63e-05)]_329_\
    [+1(1.99e-06)]_8_[-2(7.72e-05)]_196_[+3(2.36e-06)]_37_[+3(1.33e-05)]_331
AT3G50050                        3.50e-02  139_[+1(1.58e-05)]_557_\
    [-3(5.18e-05)]_24_[+3(2.71e-05)]_243
AT3G44260                        6.89e-04  549_[-1(1.90e-05)]_319_\
    [+2(1.88e-07)]_5_[+2(2.92e-05)]_54
AT3G55980                        8.27e-07  51_[-1(3.92e-06)]_61_[+2(1.02e-08)]_\
    12_[-1(1.10e-05)]_65_[-1(2.24e-05)]_361_[+2(9.56e-05)]_111_[+3(3.08e-05)]_\
    28_[-2(5.90e-07)]_72_[+1(6.72e-06)]_23_[+1(4.35e-06)]_13_[+1(1.98e-05)]_15
AT3G48650                        3.35e-04  4_[+1(4.64e-06)]_146_[-1(1.75e-06)]_\
    22_[+1(2.13e-06)]_332_[+3(3.94e-05)]_390_[-1(1.35e-07)]_35
AT3G15500                        2.80e-04  191_[+3(9.64e-05)]_131_\
    [-3(8.51e-05)]_3_[-1(4.75e-05)]_46_[-2(6.52e-07)]_50_[+2(1.89e-06)]_6_\
    [+3(3.08e-05)]_222_[+3(1.33e-05)]_234
AT3G04640                        7.17e-04  2_[+3(4.25e-05)]_50_[+1(3.15e-06)]_\
    269_[+2(8.30e-05)]_159_[-3(7.93e-05)]_89_[+1(1.50e-05)]_115_[-1(3.77e-07)]_\
    220
AT4G24570                        5.35e-07  150_[+1(7.68e-05)]_154_\
    [+2(3.16e-05)]_2_[+3(3.44e-06)]_400_[-1(1.22e-06)]_69_[+2(7.76e-08)]_108_\
    [+3(4.52e-06)]_7
AT4G29780                        1.76e-11  130_[-1(1.35e-07)]_364_\
    [-1(1.35e-07)]_209_[-1(3.47e-05)]_138_[+2(1.47e-12)]_8_[-1(8.31e-05)]_50_\
    [+3(2.34e-05)]_1
AT4G14450                        9.80e-06  463_[-3(5.68e-05)]_97_\
    [-1(1.58e-06)]_266_[+3(1.33e-05)]_95_[+2(1.18e-06)]_13
AT4G08950                        1.89e-04  311_[-1(8.31e-05)]_57_\
    [-2(5.33e-07)]_429_[-1(4.75e-05)]_26_[-1(1.75e-06)]_103
AT4G25490                        2.42e-06  70_[+2(4.81e-07)]_39_[-1(2.89e-05)]_\
    13_[-1(3.84e-05)]_28_[-2(1.89e-06)]_57_[-3(2.60e-05)]_82_[+2(8.91e-05)]_\
    367_[-2(9.56e-05)]_13_[-2(8.68e-08)]_65_[+2(4.35e-07)]_9_[+2(6.21e-05)]_13
AT4G27270                        2.97e-03  68_[+1(8.63e-05)]_80_[+3(6.25e-05)]_\
    3_[+2(3.60e-06)]_66_[-2(7.19e-05)]_71_[-2(7.19e-05)]_20_[-3(2.34e-05)]_44_\
    [-2(6.21e-05)]_255_[+3(3.94e-05)]_229
AT4G27654                        3.55e-03  33_[-3(1.93e-05)]_3_[+1(4.35e-06)]_\
    10_[+1(6.64e-05)]_913
AT4G32480                        2.72e-04  182_[-3(1.33e-05)]_190_\
    [+3(5.18e-05)]_420_[+2(1.68e-07)]_55_[+2(1.43e-06)]_73
AT4G13395                        4.91e-06  650_[+2(2.31e-05)]_13_\
    [-3(2.36e-06)]_32_[+1(1.90e-05)]_138_[+1(8.74e-06)]_35_[+2(1.88e-07)]_33
AT5G61600                        2.32e-02  835_[+1(7.46e-05)]_97_\
    [-1(4.35e-06)]_38
AT5G51190                        3.93e-02  174_[-1(6.96e-05)]_259_\
    [+1(8.63e-05)]_211_[+1(3.93e-05)]_296_[+3(3.18e-05)]_4
AT5G54490                        3.46e-03  663_[+1(4.12e-05)]_4_[-1(1.66e-05)]_\
    165_[+1(1.58e-05)]_108_[+3(4.52e-06)]_4
AT5G45630                        8.66e-04  173_[-3(5.18e-05)]_5_[+3(2.34e-05)]_\
    79_[-2(2.87e-07)]_13_[+2(7.96e-07)]_650
AT5G52050                        8.10e-03  639_[+1(2.13e-06)]_346
AT5G56550                        1.56e-04  114_[-2(3.01e-06)]_164_\
    [-2(7.19e-05)]_65_[+3(5.18e-05)]_324_[+1(2.13e-06)]_249
AT5G35777                        1.52e-01  640_[+3(1.33e-05)]_349
AT5G25240                        8.78e-08  29_[-1(1.39e-06)]_52_[-3(5.18e-05)]_\
    193_[-3(1.33e-05)]_232_[-3(3.08e-05)]_226_[+1(3.62e-06)]_9_[+2(2.43e-09)]_\
    22_[+2(4.31e-06)]_116
AT5G57560                        7.13e-06  212_[+2(6.21e-05)]_135_\
    [+1(1.35e-07)]_10_[+3(3.08e-05)]_467_[+2(3.29e-06)]_92
--------------------------------------------------------------------------------

********************************************************************************


********************************************************************************
Stopped because nmotifs = 3 reached.
********************************************************************************

CPU: bl8vbox

********************************************************************************
