animate2d               Animate 2D expressions along one axis and
                        generate GIF file.
doadJunker2014          Load data of Junker2014 from cache.
downloadJunker2014      Download part of the Tomo-seq data published by
                        Junker et al.
estimate3dExpressions   Estimate 3d expressions
extractGeneList         Extract geneIDs to which hoge can be applied.
findAxialGenes          Find peak genes on axial
getReconstructedResult
                        Get reconstructed matrix
imageViewer             Output the reconstructed expression pattern as
                        an image.
mask                    A matrix containing mask data.
masker                  Make mask
plot1dAllExpression     Plot expressions of all genes along an axis
plot1dExpression        Plot expression of single gene along an axis
plotLossFunction        Plot the trend of the value of the loss
                        function.
testx                   A data.frame object containing a simulated
                        Tomo-seq data for x-axis sections.
testy                   A data.frame object containing a simulated
                        Tomo-seq data for y-axis sections.
testz                   A data.frame object containing a simulated
                        Tomo-seq data for z-axis sections.
toDataFrame             Convert reconstructed matrix to data.frame.
tomoObj                 A tomoSeq object.
