aggregateCHRPlot	aggregateCHRPlot
alleleFrequencyPlot	alleleFrequencyPlot
cols	removeOutlierFromCalc
dataframe	removeOutlierFromCalc
documentErrorRegions	documentErrorRegions
hiddenMarkovAnalysis	hiddenMarkovAnalysis
humanGBMsampleAC	humanGBMsampleAC
initialStartProbabilities	initialStartProbabilities
marginalLikelihoodM1	marginalLikelihoodM1
marginalLikelihoodM2	marginalLikelihoodM2
marginalM1Calc	marginalM1Calc
marginalM2CalcBHET	marginalM2CalcBHET
marginalM2CalcBLOH	marginalM2CalcBLOH
modePeakCalc	modePeakCalc
newValue	removeOutlierFromCalc
prepareHMMdataframes	prepareHMMdataframes
regionAnalysis	regionAnalysis
regionFinalize	regionFinalize
removeOutlierFromCalc	removeOutlierFromCalc
rows	removeOutlierFromCalc
runHMM_1	runHMM_1
runHMM_2	runHMM_2
runHMM_3	runHMM_3
splitByChromosome	splitByChromosome
summarizeRegions1	summarizeRegions1
summarizeRegions2	summarizeRegions2
tLOHCalc	tLOHCalc
tLOHCalcUpdate	tLOHCalcUpdate
tLOHDataImport	tLOHDataImport
