PCzinb                  Structure learning for count data using PC
                        algorithms
build_network_se        Create a SummarizedExperiment for Network
                        Storage
classify_edges          Classify Edges as TP, FP, or FN
community_path          Community Detection and Pathway Enrichment
                        Analysis
community_similarity    Compare Community Assignments and Topological
                        Properties
compare_consensus       Compare Consensus and Reference Graphs or
                        STRINGdb Networks
compute_community_metrics
                        Compute Community Assignment Similarity Metrics
compute_topology_metrics
                        Compute Network Topological Properties
create_consensus        Create a Consensus Adjacency Matrix from
                        Multiple Networks
create_mae              Create MultiAssayExperiment from Multiple
                        Single-Cell Datasets
cutoff_adjacency        Threshold Adjacency Matrices Based on Shuffled
                        Network Quantiles
download_Atlas          Download and Load an RDS File from a URL
earlyj                  Modify Cell Names and Combine Datasets
edge_mining             Edge Mining of Gene Interactions Using PubMed
generate_adjacency      Generate Adjacency Matrices from Gene
                        Interaction Tables
infer_networks          Infer Gene Regulatory Networks from Expression
                        Matrices
init_py                 Initialize Python Environment for GRNBoost2
plotROC                 Plot ROC Curves for Inferred Networks
plot_community_comparison
                        Visualize Community and Topology Comparison
plot_network_comparison
                        Visualize Network Comparison
plotg                   Visualize Graphs from Adjacency Matrices
pscores                 Compute Performance Scores for Predicted
                        Adjacency Matrices
selgene                 Select Top Expressed Genes from Single-Cell
                        Data
stringdb_adjacency      Build Adjacency Matrices for Physical
                        Interactions from STRING (POST API)
symmetrize              Symmetrize Adjacency Matrices in a
                        SummarizedExperiment
toy_adj_matrix          Toy adjacency matrix for examples
toy_counts              Toy MultiAssayExperiment for Network Inference
zinb_simdata            Simulate Zero-Inflated Negative Binomial (ZINB)
                        Count Matrices with Sequencing Depth
