build_condition         Construct logical condition to query database
connect_database        Connect to the regulondb database
convert_to_biostrings   Function to convert output of regulondb queries
                        to Biostrings objects
convert_to_granges      Function to convert output of regulondb queries
                        to GenomicRanges objects
existing_intervals      Constructs a particular logical condition to
                        query database
existing_partial_match
                        Constructs a logical condition to query
                        database
get_binding_sites       Get the binding sites for a Transcription
                        Factor (TF)
get_dataset             Extract data from RegulonDB
get_dna_objects         Retrieve genomic elements from regulonDB
get_gene_regulators     Get TFs or genes that regulate the genes of
                        interest
get_gene_synonyms       Retrieve gene synonyms
get_regulatory_network
                        Return complete regulatory network.
get_regulatory_summary
                        Return summary of gene regulation.
guess_id                Guess gene id type
list_attributes         List attributes/fields from a dataset/table
list_datasets           List available datasets in RegulonDB database
non_existing_intervals
                        Constructs a logical condition to query
                        database
plot_dna_objects        Plot annotation elements within genomic region
regulondb               Constructor function of a regulondb class
regulondb-class         The regulondb class
regulondb_result-class
                        The regulondb_results class
show                    Methods for regulondb objects
