# Generated by roxygen2: do not edit by hand

export(chooseHclustMet)
export(createUniverse)
export(crosswisePermTest)
export(gMXR)
export(getHClust)
export(getMatrix)
export(getMultiEvaluation)
export(getParameters)
export(mLZS)
export(makeCrosswiseMatrix)
export(makeLZMatrix)
export(multiLocalZscore)
export(plotCrosswiseDimRed)
export(plotCrosswiseMatrix)
export(plotLocalZScoreMatrix)
export(plotSingleLZ)
export(plotSinglePT)
export(randomizeRegionsPerc)
export(similarRegionSet)
exportClasses(genoMatriXeR)
exportClasses(multiLocalZScore)
import(ggplot2)
import(regioneR)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rtsne,Rtsne)
importFrom(cluster,pam)
importFrom(cluster,silhouette)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,colorRampPalette)
importFrom(grid,arrow)
importFrom(grid,unit)
importFrom(methods,as)
importFrom(methods,hasArg)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,validObject)
importFrom(reshape2,melt)
importFrom(scales,alpha)
importFrom(stats,aggregate)
importFrom(stats,cophenetic)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,dnorm)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,p.adjust)
importFrom(stats,princomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,smooth.spline)
importFrom(umap,umap)
