Package: regionalpcs
Title: Summarizing Regional Methylation with Regional Principal
        Components Analysis
Version: 1.8.0
Authors@R: 
    person("Tiffany", "Eulalio", , "tyeulalio@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-7084-9646"))
Description: Functions to summarize DNA methylation data using regional
        principal components. Regional principal components are
        computed using principal components analysis within genomic
        regions to summarize the variability in methylation levels
        across CpGs. The number of principal components is chosen using
        either the Marcenko-Pasteur or Gavish-Donoho method to identify
        relevant signal in the data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/tyeulalio/regionalpcs
BugReports: https://github.com/tyeulalio/regionalpcs/issues
biocViews: DNAMethylation, DifferentialMethylation, StatisticalMethod,
        Software, MethylationArray
Imports: dplyr, PCAtools, tibble, GenomicRanges
Suggests: knitr, rmarkdown, RMTstat, testthat (>= 3.0.0), BiocStyle,
        tidyr, minfiData, TxDb.Hsapiens.UCSC.hg19.knownGene, IRanges
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:26:24 UTC
RemoteUrl: https://github.com/bioc/regionalpcs
RemoteRef: RELEASE_3_22
RemoteSha: 4e75c34505b7293d179bcfa79336ec4cc92c9bc7
NeedsCompilation: no
Packaged: 2025-12-24 08:29:16 UTC; root
Author: Tiffany Eulalio [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7084-9646>)
Maintainer: Tiffany Eulalio <tyeulalio@gmail.com>
Built: R 4.5.2; ; 2025-12-24 08:44:52 UTC; unix
