raer-package	raer
annot_from_gr	annot_from_gr
annot_snps	annot_snps
annot_snps.GRanges	annot_snps
annot_snps.SummarizedExperiment	annot_snps
calc_AEI	calc_AEI
calc_confidence	calc_confidence
calc_edit_frequency	calc_edit_frequency
calc_scAEI	calc_scAEI
correct_strand	correct_strand
FilterParam	pileup_sites
filter_clustered_variants	filter_clustered_variants
filter_multiallelic	filter_multiallelic
filter_splice_variants	filter_splice_variants
find_de_sites	find_de_sites
find_mispriming_sites	find_mispriming_sites
find_scde_sites	find_scde_sites
get_overlapping_snps	get_overlapping_snps
get_scAEI_sites	calc_scAEI
get_splice_sites	get_splice_sites
make_de_object	make_de_object
mock_rse	mock_rse
pileup_cells	pileup_cells
pileup_sites	pileup_sites
raer	raer
raer_example	raer_example
read_sparray	read_sparray
