PipelineDefinition      PipelineDefinition
PipelineDefinition-methods
                        Methods for 'PipelineDefinition' class
addPipelineStep         addPipelineStep
aggregatePipelineResults
                        aggregatePipelineResults
buildCombMatrix         buildCombMatrix
checkPipelinePackages   checkPipelinePackages
clustMetricsCorr        Correlations across clustering evaluation
                        metrics
colCenterScale          colCenterScale
ctrlgenes               Lists of control genes
dea_evalPlot_curve      dea_evalPlot_curve
dea_pipeline            dea_pipeline
defaultStepAggregation
                        defaultStepAggregation
evalHeatmap             evalHeatmap
evaluateClustering      evaluateClustering
evaluateDEA             evaluateDEA
evaluateDimRed          evaluateDimRed
evaluateNorm            evaluateNorm
exampleDEAresults       Example results from the DEA pipeline
exampleResults          Example pipeline results
farthestPoint           farthestPoint
getDimensionality       getDimensionality
getQualitativePalette   getQualitativePalette
match_evaluate_multiple
                        match_evaluate_multiple
mergePipelineResults    mergePipelineResults
mockPipeline            mockPipeline
parsePipNames           parsePipNames
pipeComp-package        pipeComp - a framework for pipeline
                        benchmarking
plotElapsed             plotElapsed
readPipelineResults     readPipelineResults
runPipeline             runPipeline
scrna_describeDatasets
                        scrna_describeDatasets
scrna_evalPlot_filtering
                        scrna_evalPlot_filtering
scrna_evalPlot_overall
                        scrna_evalPlot_overall
scrna_evalPlot_silh     scrna_evalPlot_silh
scrna_pipeline          scrna_pipeline
stableG                 Lists of stable genes
