Package: nempi
Type: Package
Title: Inferring unobserved perturbations from gene expression data
Version: 1.18.0
Authors@R: person("Martin", "Pirkl", 
    email = "martinpirkl@yahoo.de",
    role = c("aut", "cre"))
Depends: R (>= 4.1), mnem
Description: Takes as input an incomplete perturbation 
    profile and differential gene expression in log odds and 
    infers unobserved perturbations and augments observed 
    ones. The inference is done by iteratively inferring a 
    network from the perturbations and inferring perturbations 
    from the network. The network inference is done by 
    Nested Effects Models.
License: GPL-3
Encoding: UTF-8
biocViews: Software, GeneExpression, DifferentialExpression,
        DifferentialMethylation, GeneSignaling, Pathways, Network,
        Classification, NeuralNetwork, NetworkInference, ATACSeq,
        DNASeq, RNASeq, PooledScreens, CRISPR, SingleCell,
        SystemsBiology
Imports: e1071, nnet, randomForest, naturalsort, graphics, stats,
        utils, matrixStats, epiNEM
VignetteBuilder: knitr
Suggests: knitr, BiocGenerics, rmarkdown, RUnit, BiocStyle
BugReports: https://github.com/cbg-ethz/nempi/issues
URL: https://github.com/cbg-ethz/nempi/
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/nempi
git_branch: RELEASE_3_22
git_last_commit: 2f9cff2
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 04:41:03 UTC; biocbuild
Author: Martin Pirkl [aut, cre]
Maintainer: Martin Pirkl <martinpirkl@yahoo.de>
Built: R 4.5.1; ; 2025-10-30 12:28:24 UTC; unix
