multistateQTL-package	multistateQTL-package
callSignificance	callSignificance
callSignificance,QTLExperiment-method	callSignificance
callSignificance<-	callSignificance
getComplete	getComplete
getSignificant	getSignificant
getTopHits	getTopHits
multistateQTL	multistateQTL-package
plotCompareStates	plotCompareStates
plotPairwiseSharing	plotPairwiseSharing
plotQTLClusters	plotQTLClusters
plotSimulationParams	plotSimulationParams
plotUpSet	plotUpSet
qtleEstimate	qtleEstimate
qtleParams	qtleParams
qtleParams2	qtleEstimate
qtleSimulate	qtleSimulate
replaceNAs	replaceNAs
runPairwiseSharing	runPairwiseSharing
runSignificantFeatures	runSignificantFeatures
runTestMetrics	runTestMetrics
simPerformance	simPerformance
