CPD                     CPD
KNC                     k-nearest class means (KNC)
KNN                     k-nearest neighbour (KNN)
computeStructuralMetrics
                        Metrics for the assessment of post-imputation
                        structural preservation
evidenceToMatrix        Creates intensity matrix from tabular data in
                        evidence table of MaxQuant
findVariableFeatures    Find highly variable peptides
msImpute                Imputation of peptide log-intensity in mass
                        spectrometry label-free proteomics by low-rank
                        approximation
mspip                   Fills missing values by Peptide Identity
                        Propagation (PIP)
plotCV2                 Plot mean-CV^2 trend
pxd007959               Processed peptide intensity matrix and
                        experimental design table from PXD007959 study
pxd010943               SWATH-MS Analysis of Gfi1-mutant bone marrow
                        neutrophils
pxd014777               Processed peptide intensity matrix from
                        PXD014777 study
scaleData               Standardize a matrix to have optionally row
                        means zero and variances one, and/or column
                        means zero and variances one.
selectFeatures          Select features for MAR/MNAR pattern
                        examination
