an R package for visualization of tree and annotation data
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Documentation for package ‘ggtree’ version 3.99.0
Help Pages
A C D E F G H I L M N O R S T V X Z misc
-- A --
| add_colorbar | add_colorbar |
| applyLayoutDaylight | applyLayoutDaylight |
| as.polytomy | as.polytomy |
-- C --
| collapse.ggtree | collapse-ggtree |
-- D --
| Date2decimal | Date2decimal |
| decimal2Date | decimal2Date |
-- E --
| expand | expand |
-- F --
| facet_data | facet_data |
| facet_labeller | facet_labeller |
| facet_plot | facet_plot |
| facet_widths | facet_widths |
| flip | flip |
-- G --
| GeomHilightEncircle | ggproto classes of ggtree |
| GeomInteractiveCurvelink | ggproto classes for ggiraph |
| GeomInteractiveHilightEncircle | ggproto classes for ggiraph |
| GeomInteractiveHilightRect | ggproto classes for ggiraph |
| GeomInteractiveLabelGGtree | ggproto classes for ggiraph |
| GeomInteractivePointGGtree | ggproto classes for ggiraph |
| GeomInteractiveSegmentGGtree | ggproto classes for ggiraph |
| GeomInteractiveTextGGtree | ggproto classes for ggiraph |
| geom_aline | geom_aline |
| geom_balance | geom_balance |
| geom_cladelab | geom_cladelab |
| geom_cladelabel | geom_cladelabel |
| geom_cladelabel2 | geom_cladelabel2 |
| geom_facet | facet_plot |
| geom_highlight | geom_hilight |
| geom_hilight | geom_hilight |
| geom_inset | geom_inset |
| geom_label2 | geom_label2 |
| geom_label2_interactive | Create interactive label of ggtree |
| geom_motif | geom_motif |
| geom_nodelab | geom_nodelab |
| geom_nodelab2 | geom_nodelab2 |
| geom_nodepoint | geom_nodepoint |
| geom_point2 | geom_point2 |
| geom_point2_interactive | Create interactive point of ggtree |
| geom_range | geom_range |
| geom_rootedge | geom_rootedge |
| geom_rootpoint | geom_rootpoint |
| geom_segment2 | geom_segment2 |
| geom_segment2_interactive | Create interactive line segments of ggtree |
| geom_strip | geom_strip |
| geom_striplab | geom_striplab |
| geom_taxalink | link between taxa |
| geom_text2 | geom_text2 |
| geom_text2_interactive | Create interactive text of ggtree |
| geom_tiplab | geom_tiplab |
| geom_tiplab2 | geom_tiplab2 |
| geom_tippoint | geom_tippoint |
| geom_tree | geom_tree |
| geom_tree2 | geom_tree2 |
| geom_treescale | geom_treescale |
| geom_zoom_clade | geom_zoom_clade |
| get.path | get.path |
| getNodeAngle.df | getNodeAngle.df |
| getNodesBreadthFirst.df | getNodesBreadthFirst.df |
| getSubtree | getSubtree |
| getSubtree.df | getSubtree.df |
| getSubtreeUnrooted | getSubtreeUnrooted |
| getSubtreeUnrooted.df | getSubtreeUnrooted |
| getTreeArcAngles | getTreeArcAngles |
| get_clade_position | get_clade_position |
| get_heatmap_column_position | get_heatmap_column_position |
| get_taxa_name | get_taxa_name |
| ggdensitree | ggdensitree |
| ggexpand | hexpand |
| ggtree | ggtree |
| gheatmap | gheatmap |
| gzoom | gzoom method |
| gzoom-method | gzoom method |
| gzoom.phylo | gzoom |
-- H --
| hexpand | hexpand |
-- I --
| inset | geom_inset |
-- L --
| label_pad | Padding taxa labels |
| layoutDaylight | Equal daylight layout method for unrooted trees. |
| layoutEqualAngle | layoutEqualAngle |
| layout_circular | layout_rectangular |
| layout_dendrogram | layout_rectangular |
| layout_fan | layout_rectangular |
| layout_inward_circular | layout_rectangular |
| layout_rectangular | layout_rectangular |
-- M --
| msaplot | msaplot |
| multiplot | multiplot |
-- N --
| nodebar | nodebar |
| nodepie | nodepie |
-- O --
| open_tree | open_tree |
-- R --
| range_format | range_format |
| revts | revts |
| rotate | rotate |
| rotateTreePoints.df | rotateTreePoints.data.frame |
| rotate_tree | rotate_tree |
-- S --
| scaleClade | scaleClade |
| scale_color | scale_color method |
| scale_color-method | scale_color method |
| scale_color_subtree | scale_color_subtree |
| scale_colour_subtree | scale_color_subtree |
| scale_x_ggtree | scale_x_ggtree |
| scale_x_range | scale_x_range |
| set_hilight_legend | set_hilight_legend |
| StatBalance | StatBalance |
-- T --
| theme_dendrogram | theme_dendrogram |
| theme_inset | theme_inset |
| theme_tree | theme_tree |
| theme_tree2 | theme_tree2 |
-- V --
| vexpand | hexpand |
| viewClade | viewClade |
-- X --
| xlim_expand | xlim_expand |
| xlim_tree | xlim_tree |
-- Z --
| zoomClade | zoomClade |
-- misc --
| %+>% | %+>% |
| %<% | %<% |