AsCas12a                AsCas12a CrisprNuclease object
BE4max                  BE4max BaseEditor object
CasRx                   CasRx CrisprNuclease object
CrisprNickase-class     An S4 class to represent a CRISPR nickase.
Csm                     Csm CrisprNuclease object
MAD7                    MAD7 CrisprNuclease object
SaCas9                  SaCas9 CrisprNuclease object
SpCas9                  SpCas9 CrisprNuclease object
SpG                     SpG CrisprNuclease object
annotateMismatches      Annotate mismatches between spacer and
                        protospacer sequences
baseEditorName          An S4 class to represent a base editor
enAsCas12a              enAsCas12a CrisprNuclease object
extractPamFromTarget    Extract PAM sequences from target sequences
extractProtospacerFromTarget
                        Extract protospacer sequences from target
                        sequences
getAvailableCrisprNucleases
                        Return list of available CrisprNuclease objects
                        in crisprBase
getCutSiteFromPamSite   Return cut site coordinates from PAM site
                        coordinates
getCutSiteRanges        Construct a cut site GRanges from a list of PAM
                        sites
getEditingSiteFromPamSite
                        Return optimal editing site coordinates from
                        PAM site coordinates
getPamRanges            Construct a PAM GRanges from a list of PAM
                        sites
getProtospacerRanges    Construct a protospacer GRanges from a list of
                        PAM sites
getTargetRanges         Construct a target GRanges from a list of PAM
                        sites
motifs                  An S4 class to represent a nuclease.
nickaseName             An S4 class to represent a nickase
plotEditingWeights      Quick plot to visualize editing weights
restrictionEnzymes      List of Nuclease objects representing common
                        restriction enzymes
spacerLength            An S4 class to represent a CRISPR nuclease.
